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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 7238.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
7238 8105958 NM_000344 SMN1 link to infopage survival of motor neuron 1, telomeric

Fetching correlation data, please wait...
Getting list of correlations for id 7238.
Getting list of p-values for id 7238.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.136 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8105958 8177647 NM_000344 SMN1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8105958 8106006 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 4.721210e-78 2.360605e-78
3 8105958 8105937 AK289851 SMA5 link to infopage 0.787396 2.264958e-23 3.924493e-19 1.308164e-19
4 8105958 8112491 AK289851 SMA5 link to infopage 0.781079 8.593327e-23 1.488966e-18 3.722414e-19
5 8105958 8074925 NR_024448 LOC91316 link to infopage 0.755084 1.346364e-20 2.332844e-16 4.665689e-17
6 8105958 8124469 BC171739 GUSBL1 link to infopage 0.751860 2.411554e-20 4.178500e-16 6.964167e-17
7 8105958 8105995 AK289851 SMA5 link to infopage 0.751665 2.497396e-20 4.327238e-16 6.181768e-17
8 8105958 7981217 NM_018036 ATG2B link to infopage 0.751127 2.750161e-20 4.765204e-16 5.956506e-17
9 8105958 8111455 NR_003504 GUSBL1 link to infopage 0.748523 4.368046e-20 7.568513e-16 8.409459e-17
10 8105958 8112558 NR_003504 GUSBL1 link to infopage 0.743295 1.087673e-19 1.884611e-15 1.884611e-16
11 8105958 8041149 NM_015131 WDR43 link to infopage 0.724637 2.375520e-18 4.116063e-14 3.741876e-15
12 8105958 8175420 NM_002139 RBMX link to infopage 0.723823 2.701847e-18 4.681489e-14 3.901241e-15
13 8105958 8150928 NM_003580 NSMAF link to infopage 0.712844 1.469268e-17 2.545800e-13 1.958308e-14
14 8105958 7915130 NM_006802 SF3A3 link to infopage 0.710770 2.005278e-17 3.474546e-13 2.481818e-14
15 8105958 8132070 NM_002047 GARS link to infopage 0.710331 2.140849e-17 3.709449e-13 2.472966e-14
16 8105958 8009205 NM_007372 DDX42 link to infopage 0.710249 2.167201e-17 3.755110e-13 2.346944e-14
17 8105958 8014551 NM_007247 SYNRG link to infopage 0.710000 2.249248e-17 3.897273e-13 2.292513e-14
18 8105958 7920766 NM_018489 ASH1L link to infopage 0.709515 2.417495e-17 4.188794e-13 2.327108e-14
19 8105958 8047641 NM_177538 CYP20A1 link to infopage 0.708763 2.702520e-17 4.682657e-13 2.464556e-14
20 8105958 7916185 NM_001009881 ZCCHC11 link to infopage 0.706430 3.811281e-17 6.603806e-13 3.301903e-14
21 8105958 8154793 NM_002504 NFX1 link to infopage 0.706285 3.892886e-17 6.745204e-13 3.212002e-14
22 8105958 8147483 NM_178812 MTDH link to infopage 0.705874 4.134545e-17 7.163926e-13 3.256330e-14
23 8105958 8104998 NM_018034 WDR70 link to infopage 0.705464 4.389417e-17 7.605544e-13 3.306758e-14
24 8105958 8096808 NM_017918 CCDC109B link to infopage 0.704584 4.990298e-17 8.646689e-13 3.602787e-14
25 8105958 8002729 NR_027264 GLG1 link to infopage 0.703493 5.846851e-17 1.013084e-12 4.052336e-14
26 8105958 7930956 NM_007190 SEC23IP link to infopage 0.702653 6.601567e-17 1.143853e-12 4.399436e-14
27 8105958 8136401 NM_015135 NUP205 link to infopage 0.702378 6.869146e-17 1.190217e-12 4.408211e-14
28 8105958 8157534 NM_007018 CEP110 link to infopage 0.702225 7.022233e-17 1.216742e-12 4.345508e-14
29 8105958 7931728 NM_015155 LARP4B link to infopage 0.701546 7.742236e-17 1.341497e-12 4.625852e-14
30 8105958 7916304 NM_147193 GLIS1 link to infopage -0.699740 1.002675e-16 1.737335e-12 5.791116e-14
31 8105958 7996947 NM_030579 CYB5B link to infopage 0.698865 1.135619e-16 1.967688e-12 6.347380e-14
32 8105958 8009382 NM_004459 BPTF link to infopage 0.698772 1.150721e-16 1.993855e-12 6.230796e-14
33 8105958 7999496 NM_014153 ZC3H7A link to infopage 0.697821 1.316703e-16 2.281452e-12 6.913491e-14
34 8105958 7975725 NM_019589 YLPM1 link to infopage 0.695410 1.848988e-16 3.203741e-12 9.422767e-14
35 8105958 7972069 NM_015057 MYCBP2 link to infopage 0.694587 2.074486e-16 3.594462e-12 1.026989e-13
36 8105958 8020630 NM_153211 TTC39C link to infopage 0.693960 2.263918e-16 3.922691e-12 1.089636e-13
37 8105958 8108927 NM_018989 RBM27 link to infopage 0.693100 2.551466e-16 4.420925e-12 1.194845e-13
38 8105958 7907310 NM_015172 BAT2L2 link to infopage 0.692774 2.669591e-16 4.625600e-12 1.217263e-13
39 8105958 8100714 NM_001031732 YTHDC1 link to infopage 0.692722 2.688965e-16 4.659169e-12 1.194659e-13
40 8105958 7926565 NM_004641 MLLT10 link to infopage 0.691690 3.101152e-16 5.373367e-12 1.343342e-13
41 8105958 7977693 NM_020920 CHD8 link to infopage 0.691569 3.153610e-16 5.464259e-12 1.332746e-13
42 8105958 7930380 NM_016824 ADD3 link to infopage 0.691370 3.241238e-16 5.616094e-12 1.337165e-13
43 8105958 7982957 NM_001080541 MGA link to infopage 0.691242 3.299000e-16 5.716177e-12 1.329344e-13
44 8105958 8154059 NM_003070 SMARCA2 link to infopage 0.691237 3.301199e-16 5.719988e-12 1.299997e-13
45 8105958 7967287 NM_017612 ZCCHC8 link to infopage 0.690725 3.542015e-16 6.137249e-12 1.363833e-13
46 8105958 8114861 NM_020117 LARS link to infopage 0.689493 4.193855e-16 7.266692e-12 1.579716e-13
47 8105958 7971422 NM_015070 ZC3H13 link to infopage 0.689329 4.288843e-16 7.431279e-12 1.581123e-13
48 8105958 8059689 NM_005381 NCL link to infopage 0.688685 4.683111e-16 8.114426e-12 1.690505e-13
49 8105958 8134180 NM_019004 ANKIB1 link to infopage 0.688156 5.032802e-16 8.720337e-12 1.779661e-13
50 8105958 8067011 NM_015339 ADNP link to infopage 0.687965 5.165165e-16 8.949682e-12 1.789936e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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