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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 8677.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
8677 8106006 NM_000344 SMN1 link to infopage survival of motor neuron 1, telomeric

Fetching correlation data, please wait...
Getting list of correlations for id 8677.
Getting list of p-values for id 8677.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.104 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8106006 8105958 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 4.721210e-78 4.721210e-78
2 8106006 8177647 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 4.721210e-78 2.360605e-78
3 8106006 8105937 AK289851 SMA5 link to infopage 0.825136 2.702634e-27 4.682855e-23 1.560952e-23
4 8106006 8112491 AK289851 SMA5 link to infopage 0.819391 1.222394e-26 2.118042e-22 5.295104e-23
5 8106006 8074925 NR_024448 LOC91316 link to infopage 0.795398 3.914165e-24 6.782073e-20 1.356415e-20
6 8106006 8105995 AK289851 SMA5 link to infopage 0.790777 1.088948e-23 1.886820e-19 3.144699e-20
7 8106006 8124469 BC171739 GUSBL1 link to infopage 0.789606 1.405338e-23 2.435029e-19 3.478612e-20
8 8106006 8111455 NR_003504 GUSBL1 link to infopage 0.789358 1.483196e-23 2.569934e-19 3.212418e-20
9 8106006 7981217 NM_018036 ATG2B link to infopage 0.786764 2.593589e-23 4.493912e-19 4.993236e-20
10 8106006 8112558 NR_003504 GUSBL1 link to infopage 0.783792 4.873456e-23 8.444236e-19 8.444236e-20
11 8106006 7916185 NM_001009881 ZCCHC11 link to infopage 0.756651 1.010798e-20 1.751410e-16 1.592191e-17
12 8106006 8009382 NM_004459 BPTF link to infopage 0.749566 3.631976e-20 6.293125e-16 5.244271e-17
13 8106006 7920766 NM_018489 ASH1L link to infopage 0.745689 7.182301e-20 1.244477e-15 9.572903e-17
14 8106006 8175420 NM_002139 RBMX link to infopage 0.744487 8.850722e-20 1.533565e-15 1.095403e-16
15 8106006 8014551 NM_007247 SYNRG link to infopage 0.740103 1.878171e-19 3.254306e-15 2.169538e-16
16 8106006 8136401 NM_015135 NUP205 link to infopage 0.739723 2.003228e-19 3.470993e-15 2.169371e-16
17 8106006 8067011 NM_015339 ADNP link to infopage 0.738306 2.545063e-19 4.409830e-15 2.594018e-16
18 8106006 8100714 NM_001031732 YTHDC1 link to infopage 0.737892 2.728736e-19 4.728081e-15 2.626712e-16
19 8106006 8097867 NM_015196 KIAA0922 link to infopage 0.737121 3.105794e-19 5.381409e-15 2.832321e-16
20 8106006 8041149 NM_015131 WDR43 link to infopage 0.734613 4.717032e-19 8.173201e-15 4.086600e-16
21 8106006 8132070 NM_002047 GARS link to infopage 0.734127 5.112454e-19 8.858349e-15 4.218261e-16
22 8106006 8157534 NM_007018 CEP110 link to infopage 0.734124 5.114583e-19 8.862037e-15 4.028199e-16
23 8106006 8150928 NM_003580 NSMAF link to infopage 0.731210 8.254831e-19 1.430315e-14 6.218759e-16
24 8106006 8100902 NM_032217 ANKRD17 link to infopage 0.731202 8.264862e-19 1.432053e-14 5.966886e-16
25 8106006 8047641 NM_177538 CYP20A1 link to infopage 0.730431 9.371845e-19 1.623860e-14 6.495438e-16
26 8106006 7915130 NM_006802 SF3A3 link to infopage 0.729865 1.027348e-18 1.780086e-14 6.846486e-16
27 8106006 8141648 NM_015831 ACHE link to infopage -0.729863 1.027720e-18 1.780730e-14 6.595295e-16
28 8106006 8088776 NM_032682 FOXP1 link to infopage 0.729538 1.083283e-18 1.877005e-14 6.703589e-16
29 8106006 7975725 NM_019589 YLPM1 link to infopage 0.728955 1.190291e-18 2.062417e-14 7.111782e-16
30 8106006 8104998 NM_018034 WDR70 link to infopage 0.728936 1.194086e-18 2.068993e-14 6.896643e-16
31 8106006 7999496 NM_014153 ZC3H7A link to infopage 0.725839 1.962467e-18 3.400367e-14 1.096893e-15
32 8106006 8051882 NM_133259 LRPPRC link to infopage 0.725720 2.000130e-18 3.465625e-14 1.083008e-15
33 8106006 7930380 NM_016824 ADD3 link to infopage 0.725571 2.047972e-18 3.548521e-14 1.075309e-15
34 8106006 8054614 NM_022662 ANAPC1 link to infopage 0.725092 2.210080e-18 3.829406e-14 1.126296e-15
35 8106006 7930956 NM_007190 SEC23IP link to infopage 0.724428 2.455507e-18 4.254658e-14 1.215617e-15
36 8106006 7996947 NM_030579 CYB5B link to infopage 0.724223 2.536228e-18 4.394523e-14 1.220701e-15
37 8106006 7972069 NM_015057 MYCBP2 link to infopage 0.723895 2.671477e-18 4.628869e-14 1.251046e-15
38 8106006 7916304 NM_147193 GLIS1 link to infopage -0.723273 2.946754e-18 5.105841e-14 1.343642e-15
39 8106006 7925978 NM_017782 C10orf18 link to infopage 0.722969 3.091524e-18 5.356684e-14 1.373509e-15
40 8106006 8009205 NM_007372 DDX42 link to infopage 0.722565 3.294144e-18 5.707763e-14 1.426941e-15
41 8106006 8092035 NM_024947 PHC3 link to infopage 0.721210 4.072486e-18 7.056396e-14 1.721072e-15
42 8106006 7955019 NM_152641 ARID2 link to infopage 0.720929 4.255332e-18 7.373213e-14 1.755527e-15
43 8106006 8172119 NM_004229 MED14 link to infopage 0.719799 5.072813e-18 8.789662e-14 2.044108e-15
44 8106006 8154333 NM_015061 KDM4C link to infopage 0.719226 5.544587e-18 9.607107e-14 2.183433e-15
45 8106006 7917156 NM_003902 FUBP1 link to infopage 0.718986 5.753741e-18 9.969507e-14 2.215446e-15
46 8106006 7969794 AY358798 LOC100132099 link to infopage 0.718964 5.774068e-18 1.000473e-13 2.174941e-15
47 8106006 7915882 NM_014774 KIAA0494 link to infopage 0.718949 5.787208e-18 1.002749e-13 2.133510e-15
48 8106006 8154793 NM_002504 NFX1 link to infopage 0.718850 5.875976e-18 1.018130e-13 2.121105e-15
49 8106006 7967287 NM_017612 ZCCHC8 link to infopage 0.718490 6.212670e-18 1.076469e-13 2.196876e-15
50 8106006 8147483 NM_178812 MTDH link to infopage 0.718327 6.370238e-18 1.103771e-13 2.207542e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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