[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 7449.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7449	8170407	NM_005365	MAGEA9		melanoma antigen family A, 9

Fetching correlation data, please wait...
Getting list of correlations for id 7449.
Getting list of p-values for id 7449.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.135 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8170407	8175611	NM_005365	MAGEA9	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8170407	7970033	NM_001846	COL4A2	0.673947	3.296616e-15	5.712046e-11	2.856023e-11
3	8170407	8098848	NM_213613	SLC26A1	0.666597	8.370950e-15	1.450435e-10	4.834782e-11
4	8170407	8013533	ENST00000302153		0.663603	1.214466e-14	2.104306e-10	5.260764e-11
5	8170407	8062427	NM_080607	VSTM2L	0.657658	2.511263e-14	4.351265e-10	8.702530e-11
6	8170407	8005529	NM_152351	SLC5A10	0.656265	2.970398e-14	5.146809e-10	8.578015e-11
7	8170407	8026265	NM_080864	RLN3	0.656196	2.995075e-14	5.189566e-10	7.413666e-11
8	8170407	7998601	NM_001146006	IGFALS	0.654536	3.653897e-14	6.331108e-10	7.913884e-11
9	8170407	8049670	NM_002081	GPC1	0.650675	5.775086e-14	1.000649e-9	1.111832e-10
10	8170407	7897753	NM_005957	MTHFR	0.649458	6.661888e-14	1.154305e-9	1.154305e-10
11	8170407	8165038	NM_001012415	SOHLH1	0.644565	1.175766e-13	2.037249e-9	1.852045e-10
12	8170407	8071554	NM_152612	CCDC116	0.642049	1.568578e-13	2.717875e-9	2.264896e-10
13	8170407	8015223	NM_031854	KRTAP4-12	0.641959	1.584597e-13	2.745632e-9	2.112024e-10
14	8170407	8019565	NM_031854	KRTAP4-12	0.641959	1.584597e-13	2.745632e-9	1.961165e-10
15	8170407	8067543	ENST00000370520		0.641426	1.683894e-13	2.917683e-9	1.945122e-10
16	8170407	7901696	NM_174936	PCSK9	0.638731	2.284408e-13	3.958195e-9	2.473872e-10
17	8170407	8075211	NM_001007279	RASL10A	0.636716	2.863916e-13	4.962307e-9	2.919004e-10
18	8170407	8035993	NM_019849	SLC7A10	0.636115	3.062618e-13	5.306598e-9	2.948110e-10
19	8170407	8119648	NM_057161	KLHDC3	-0.633597	4.050908e-13	7.019009e-9	3.694215e-10
20	8170407	7916590	NM_001625	AK2	-0.633265	4.202015e-13	7.280831e-9	3.640416e-10
21	8170407	8050497	NM_145260	OSR1	0.632755	4.445498e-13	7.702715e-9	3.667959e-10
22	8170407	8029779	NM_198541	IGFL1	0.632555	4.544214e-13	7.873760e-9	3.578982e-10
23	8170407	7994350	ENST00000357646		0.630801	5.509302e-13	9.545968e-9	4.150421e-10
24	8170407	8167407	NM_181532	ERAS	0.626638	8.658834e-13	1.500316e-8	6.251317e-10
25	8170407	8095074	NM_133267	GSX2	0.626584	8.709062e-13	1.509019e-8	6.036077e-10
26	8170407	8040265	NM_002236	KCNF1	0.625160	1.015009e-12	1.758706e-8	6.764253e-10
27	8170407	8035905	NM_032139	ANKRD27	-0.624260	1.117680e-12	1.936603e-8	7.172605e-10
28	8170407	7905020	NM_000798	DRD5	0.622282	1.379738e-12	2.390671e-8	8.538112e-10
29	8170407	7915614	NM_003738	PTCH2	0.622074	1.410600e-12	2.444147e-8	8.428092e-10
30	8170407	8137183	NM_198455	SSPO	0.621377	1.518607e-12	2.631291e-8	8.770968e-10
31	8170407	8077550	NM_001077525	MTMR14	-0.620685	1.633762e-12	2.830820e-8	9.131678e-10
32	8170407	8148674	NM_139021	MAPK15	0.620493	1.667313e-12	2.888953e-8	9.027979e-10
33	8170407	8148591	NM_178172	GPIHBP1	0.620081	1.741268e-12	3.017096e-8	9.142715e-10
34	8170407	8077879	NM_133625	SYN2	0.619998	1.756561e-12	3.043594e-8	8.951747e-10
35	8170407	8159616	NM_001144026	NDOR1	0.619059	1.938642e-12	3.359085e-8	9.597385e-10
36	8170407	7994961	NM_001330	CTF1	0.617500	2.282169e-12	3.954313e-8	1.098420e-9
37	8170407	7981775	ENST00000435482		0.616523	2.526716e-12	4.378041e-8	1.183254e-9
38	8170407	8040792	NM_007046	EMILIN1	0.616431	2.550915e-12	4.419971e-8	1.163150e-9
39	8170407	8022342	NM_006796	AFG3L2	-0.616036	2.657756e-12	4.605095e-8	1.180793e-9
40	8170407	8118069	NM_001010909	MUC21	0.615788	2.727074e-12	4.725201e-8	1.181300e-9
41	8170407	8177931	NM_001010909	MUC21	0.615278	2.875063e-12	4.981621e-8	1.215030e-9
42	8170407	8079662	NM_006321	ARIH2	-0.614863	3.001225e-12	5.200223e-8	1.238148e-9
43	8170407	7997801	NM_013278	IL17C	0.614136	3.235024e-12	5.605326e-8	1.303564e-9
44	8170407	8065344	NM_021784	FOXA2	0.614053	3.262821e-12	5.653490e-8	1.284884e-9
45	8170407	8088384	NM_000925	PDHB	-0.613653	3.400208e-12	5.891541e-8	1.309231e-9
46	8170407	8008544	NM_032559	KIF2B	0.613587	3.423477e-12	5.931858e-8	1.289534e-9
47	8170407	8123802	NM_201280	MUTED	-0.611860	4.087266e-12	7.082006e-8	1.506810e-9
48	8170407	7945536	NM_016564	CEND1	0.611124	4.406053e-12	7.634368e-8	1.590493e-9
49	8170407	7988987	NM_004498	ONECUT1	0.610548	4.672473e-12	8.095994e-8	1.652244e-9
50	8170407	7963935	NM_032364	DNAJC14	-0.609476	5.210686e-12	9.028555e-8	1.805711e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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