[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3928	8029779	NM_198541	IGFL1		IGF-like family member 1

Fetching correlation data, please wait...
Getting list of correlations for id 3928.
Getting list of p-values for id 3928.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8029779	7901696	NM_174936	PCSK9	0.758577	7.086106e-21	1.227810e-16	1.227810e-16
2	8029779	7984892	NM_021819	LMAN1L	0.753997	1.640292e-20	2.842134e-16	1.421067e-16
3	8029779	8015223	NM_031854	KRTAP4-12	0.738957	2.280343e-19	3.951151e-15	1.317050e-15
4	8029779	8019565	NM_031854	KRTAP4-12	0.738957	2.280343e-19	3.951151e-15	9.877877e-16
5	8029779	7909896			0.738756	2.359135e-19	4.087673e-15	8.175346e-16
6	8029779	8167407	NM_181532	ERAS	0.732896	6.262507e-19	1.085105e-14	1.808508e-15
7	8029779	8110803	NM_030782	CLPTM1L	-0.729623	1.068517e-18	1.851419e-14	2.644884e-15
8	8029779	8051050	NM_003459	SLC30A3	0.728301	1.322845e-18	2.292093e-14	2.865116e-15
9	8029779	8151617	AF495523	REXO1L1	0.727449	1.516994e-18	2.628496e-14	2.920551e-15
10	8029779	8151625	AF495523	REXO1L1	0.727449	1.516994e-18	2.628496e-14	2.628496e-15
11	8029779	8151613	AF495523	REXO1L1	0.727449	1.516994e-18	2.628496e-14	2.389542e-15
12	8029779	8151605	AF495523	REXO1L1	0.727449	1.516994e-18	2.628496e-14	2.190414e-15
13	8029779	8151621	AF495523	REXO1L1	0.727449	1.516994e-18	2.628496e-14	2.021920e-15
14	8029779	8133434	NM_022170	EIF4H	-0.726037	1.901455e-18	3.294650e-14	2.353322e-15
15	8029779	8137183	NM_198455	SSPO	0.725850	1.959008e-18	3.394373e-14	2.262915e-15
16	8029779	7913682	NM_000191	HMGCL	-0.725663	2.018071e-18	3.496712e-14	2.185445e-15
17	8029779	8035801	ENST00000364165		0.718999	5.742921e-18	9.950759e-14	5.853388e-15
18	8029779	7982868	NM_024111	CHAC1	0.713269	1.378004e-17	2.387668e-13	1.326482e-14
19	8029779	7960553	NM_016497	MRPL51	-0.712081	1.647792e-17	2.855129e-13	1.502700e-14
20	8029779	7947744	NM_002334	LRP4	0.711456	1.809796e-17	3.135834e-13	1.567917e-14
21	8029779	8060126	NM_198998	AQP12A	0.710470	2.097219e-17	3.633851e-13	1.730405e-14
22	8029779	8010237	ENST00000340363		0.709608	2.384257e-17	4.131202e-13	1.877819e-14
23	8029779	7946439	NM_020644	TMEM9B	-0.709116	2.564903e-17	4.444207e-13	1.932264e-14
24	8029779	8073645	NM_015380	SAMM50	-0.708160	2.954363e-17	5.119025e-13	2.132927e-14
25	8029779	7968199	NM_001260	CDK8	-0.707445	3.283304e-17	5.688980e-13	2.275592e-14
26	8029779	8068136	NM_181600	KRTAP13-4	0.706698	3.664186e-17	6.348935e-13	2.441898e-14
27	8029779	7957746	NM_213611	SLC25A3	-0.706248	3.914127e-17	6.782008e-13	2.511855e-14
28	8029779	8125850	NM_024294	C6orf106	-0.706245	3.915744e-17	6.784809e-13	2.423146e-14
29	8029779	7951928	NM_020693	DSCAML1	0.704484	5.063594e-17	8.773689e-13	3.025410e-14
30	8029779	8026265	NM_080864	RLN3	0.701852	7.409161e-17	1.283785e-12	4.279284e-14
31	8029779	8165038	NM_001012415	SOHLH1	0.700234	9.344255e-17	1.619079e-12	5.222836e-14
32	8029779	7975645	NM_021188	ZNF410	-0.699863	9.851224e-17	1.706922e-12	5.334130e-14
33	8029779	7913256	NM_005216	DDOST	-0.699063	1.104162e-16	1.913181e-12	5.797519e-14
34	8029779	8174338	NM_024657	MORC4	0.698670	1.167493e-16	2.022915e-12	5.949751e-14
35	8029779	7978208	NM_012461	TINF2	-0.698352	1.221421e-16	2.116357e-12	6.046734e-14
36	8029779	8134552	NM_005720	ARPC1B	-0.696326	1.625882e-16	2.817166e-12	7.825461e-14
37	8029779	7985418	ENST00000342039		0.696238	1.646001e-16	2.852026e-12	7.708179e-14
38	8029779	7985459	ENST00000342039		0.696238	1.646001e-16	2.852026e-12	7.505332e-14
39	8029779	7990928	ENST00000342039		0.696238	1.646001e-16	2.852026e-12	7.312888e-14
40	8029779	8117741	NM_007160	OR2H2	0.695963	1.710967e-16	2.964593e-12	7.411482e-14
41	8029779	8013533	ENST00000302153		0.695922	1.720789e-16	2.981611e-12	7.272221e-14
42	8029779	8119648	NM_057161	KLHDC3	-0.695731	1.767643e-16	3.062795e-12	7.292368e-14
43	8029779	8138773	NM_022170	EIF4H	-0.695553	1.812306e-16	3.140182e-12	7.302749e-14
44	8029779	7912670	NM_006004	UQCRH	-0.694721	2.035889e-16	3.527585e-12	8.017240e-14
45	8029779	8170971	NM_001363	DKC1	-0.694716	2.037537e-16	3.530441e-12	7.845424e-14
46	8029779	8062174	NM_198398	ERGIC3	-0.693592	2.382968e-16	4.128968e-12	8.976017e-14
47	8029779	8049729	NM_198998	AQP12A	0.693404	2.446027e-16	4.238231e-12	9.017513e-14
48	8029779	7944341	NM_006760	UPK2	0.693381	2.453935e-16	4.251934e-12	8.858195e-14
49	8029779	7967149	NM_016237	ANAPC5	-0.693055	2.567399e-16	4.448532e-12	9.078638e-14
50	8029779	7899737	NM_003757	EIF3I	-0.691013	3.404448e-16	5.898886e-12	1.179777e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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