[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 8509.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
8509	7986601	ENST00000435448

Fetching correlation data, please wait...
Getting list of correlations for id 8509.
Getting list of p-values for id 8509.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.106 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7986601	7986739	ENST00000435448		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7986601	8004428	NM_001102614	AMAC1L3	-0.636596	2.902477e-13	5.029122e-9	2.514561e-9
3	7986601	7922474	NM_014656	KIAA0040	0.628338	7.204435e-13	1.248312e-8	4.161042e-9
4	7986601	8051427	NM_005102	FEZ2	0.627073	8.261558e-13	1.431480e-8	3.578700e-9
5	7986601	8067206	NM_001008735	HMGB1L1	0.626679	8.620539e-13	1.493681e-8	2.987362e-9
6	7986601	8155490	NR_003670	KGFLP2	-0.626395	8.888419e-13	1.540096e-8	2.566827e-9
7	7986601	8063313	ENST00000437218		0.625323	9.974388e-13	1.728262e-8	2.468946e-9
8	7986601	8109620	NM_003314	TTC1	0.622308	1.375896e-12	2.384014e-8	2.980018e-9
9	7986601	8041913	NR_024188	KLRAQ1	0.620850	1.605636e-12	2.782085e-8	3.091206e-9
10	7986601	7933619	NM_147156	SGMS1	0.619035	1.943610e-12	3.367694e-8	3.367694e-9
11	7986601	7914218	NM_001135218	TAF12	0.611788	4.117109e-12	7.133715e-8	6.485195e-9
12	7986601	8171896	BC020611	CXorf21	0.611769	4.125331e-12	7.147962e-8	5.956635e-9
13	7986601	7942527	NM_006591	POLD3	0.611493	4.243360e-12	7.352470e-8	5.655746e-9
14	7986601	8119408	NM_002505	NFYA	0.610862	4.525669e-12	7.841626e-8	5.601162e-9
15	7986601	8102006	NM_005908	MANBA	0.610723	4.589880e-12	7.952885e-8	5.301924e-9
16	7986601	8082254	NR_024251	LOC100125556	-0.609946	4.967497e-12	8.607183e-8	5.379489e-9
17	7986601	7973660	NM_016576	GMPR2	0.609266	5.322692e-12	9.222629e-8	5.425076e-9
18	7986601	8094574	NM_015173	TBC1D1	0.608831	5.562439e-12	9.638039e-8	5.354466e-9
19	7986601	7960117	NM_018663	PXMP2	-0.608731	5.619111e-12	9.736233e-8	5.124333e-9
20	7986601	8007471	NM_031858	NBR1	0.606467	7.059057e-12	1.223123e-7	6.115614e-9
21	7986601	8086530	NM_015444	TMEM158	-0.605588	7.709411e-12	1.335810e-7	6.360999e-9
22	7986601	8066402	NM_016470	C20orf111	0.605233	7.987714e-12	1.384031e-7	6.291051e-9
23	7986601	7945498	NM_021920	SCT	-0.605077	8.113534e-12	1.405832e-7	6.112313e-9
24	7986601	8128123	NM_021244	RRAGD	0.601290	1.181464e-11	2.047123e-7	8.529679e-9
25	7986601	7980438	NM_004863	SPTLC2	0.600248	1.309009e-11	2.268119e-7	9.072476e-9
26	7986601	8063970	NM_001853	COL9A3	-0.599703	1.380947e-11	2.392766e-7	9.202948e-9
27	7986601	7907893	NM_001531	MR1	0.598718	1.520650e-11	2.634830e-7	9.758631e-9
28	7986601	8102817	NM_201999	ELF2	0.597164	1.769302e-11	3.065670e-7	1.094882e-8
29	7986601	8121429	NM_014845	FIG4	0.596182	1.946293e-11	3.372342e-7	1.162877e-8
30	7986601	7938012	NM_001003819	TRIM6-TRIM34	0.596166	1.949190e-11	3.377362e-7	1.125787e-8
31	7986601	7945132	NM_002017	FLI1	0.595860	2.007775e-11	3.478871e-7	1.122217e-8
32	7986601	8062213	NM_016436	PHF20	0.595805	2.018551e-11	3.497544e-7	1.092983e-8
33	7986601	8039504	NM_001145176	SHISA7	-0.595459	2.087212e-11	3.616513e-7	1.095913e-8
34	7986601	8082431	NM_004637	RAB7A	0.594956	2.190952e-11	3.796262e-7	1.116548e-8
35	7986601	7979044	NM_020921	NIN	0.594896	2.203847e-11	3.818606e-7	1.091030e-8
36	7986601	7909285	NM_006212	PFKFB2	0.594748	2.235532e-11	3.873507e-7	1.075974e-8
37	7986601	7956593	NM_006812	OS9	0.594122	2.374303e-11	4.113956e-7	1.111880e-8
38	7986601	8034276	NM_138783	ZNF653	-0.592348	2.814610e-11	4.876875e-7	1.283388e-8
39	7986601	7947015	NM_006292	TSG101	0.590850	3.246647e-11	5.625466e-7	1.442427e-8
40	7986601	7929947	NM_005521	TLX1	-0.590081	3.492573e-11	6.051581e-7	1.512895e-8
41	7986601	7968132	NM_014089	NUPL1	0.589936	3.541137e-11	6.135729e-7	1.496519e-8
42	7986601	7919751	NM_021960	MCL1	0.589520	3.683416e-11	6.382255e-7	1.519585e-8
43	7986601	8068551	NM_101395	DYRK1A	0.589425	3.716768e-11	6.440044e-7	1.497685e-8
44	7986601	8102482	NM_014822	SEC24D	0.589151	3.814209e-11	6.608880e-7	1.502018e-8
45	7986601	8028872	NM_001042544	LTBP4	-0.588550	4.037080e-11	6.995048e-7	1.554455e-8
46	7986601	7930882	NM_207009	FAM45A	0.588530	4.044557e-11	7.008004e-7	1.523479e-8
47	7986601	8055021	NM_017969	IWS1	0.588360	4.110083e-11	7.121541e-7	1.515222e-8
48	7986601	8018305	NM_016185	HN1	0.588301	4.133104e-11	7.161430e-7	1.491965e-8
49	7986601	8059739	NM_024409	NPPC	-0.588235	4.158949e-11	7.206212e-7	1.470655e-8
50	7986601	8102860	NM_002107	H3F3A	0.588172	4.183510e-11	7.248768e-7	1.449754e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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