[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1786	7996819	NM_001793	CDH3		cadherin 3, type 1, P-cadherin (placental)

Fetching correlation data, please wait...
Getting list of correlations for id 1786.
Getting list of p-values for id 1786.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.154 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7996819	7987701	NM_016642	SPTBN5	0.775799	2.532824e-22	4.388624e-18	4.388624e-18
2	7996819	7942717	NM_000260	MYO7A	0.773897	3.712359e-22	6.432404e-18	3.216202e-18
3	7996819	8110821	NM_001044	SLC6A3	0.773347	4.143135e-22	7.178810e-18	2.392937e-18
4	7996819	8125234	NM_019105	TNXB	0.772212	5.191989e-22	8.996160e-18	2.249040e-18
5	7996819	8038280	NM_000737	CGB	0.770874	6.764144e-22	1.172023e-17	2.344047e-18
6	7996819	7937560	NM_002457	MUC2	0.770064	7.930613e-22	1.374137e-17	2.290229e-18
7	7996819	8156783	NM_001855	COL15A1	0.768161	1.149816e-21	1.992286e-17	2.846123e-18
8	7996819	8123446	NM_022138	SMOC2	0.766354	1.630841e-21	2.825758e-17	3.532197e-18
9	7996819	7913450	NM_005529	HSPG2	0.766351	1.631824e-21	2.827461e-17	3.141623e-18
10	7996819	8009713	NM_178233	OTOP3	0.765934	1.768044e-21	3.063490e-17	3.063490e-18
11	7996819	7918149			0.764420	2.362500e-21	4.093504e-17	3.721368e-18
12	7996819	8038292	NM_033043	CGB5	0.762443	3.437786e-21	5.956652e-17	4.963877e-18
13	7996819	7933312	NM_001098845	ANXA8L1	0.762052	3.701284e-21	6.413215e-17	4.933243e-18
14	7996819	8007154	NM_021939	FKBP10	0.761896	3.811265e-21	6.603778e-17	4.716985e-18
15	7996819	7936762	NM_001001976	ATE1	-0.761245	4.307710e-21	7.463969e-17	4.975980e-18
16	7996819	7927367	NM_001040084	ANXA8	0.761092	4.433077e-21	7.681192e-17	4.800745e-18
17	7996819	8036072	NM_207392	KRTDAP	0.760448	5.001341e-21	8.665823e-17	5.097543e-18
18	7996819	8033487	NM_032447	FBN3	0.758990	6.563537e-21	1.137264e-16	6.318133e-18
19	7996819	8030187	NM_033043	CGB5	0.758402	7.318719e-21	1.268114e-16	6.674286e-18
20	7996819	7898773	NM_020526	EPHA8	0.757772	8.223195e-21	1.424833e-16	7.124165e-18
21	7996819	8038299	NM_033142	CGB7	0.757264	9.031210e-21	1.564838e-16	7.451609e-18
22	7996819	8113981	NM_004199	P4HA2	0.756328	1.072452e-20	1.858237e-16	8.446532e-18
23	7996819	8042537	NM_001692	ATP6V1B1	0.755996	1.139700e-20	1.974758e-16	8.585903e-18
24	7996819	7946860	NM_000352	ABCC8	0.755351	1.282383e-20	2.221985e-16	9.258271e-18
25	7996819	8115691	NM_003062	SLIT3	0.754342	1.540673e-20	2.669525e-16	1.067810e-17
26	7996819	8067011	NM_015339	ADNP	-0.753103	1.928136e-20	3.340881e-16	1.284954e-17
27	7996819	7906307	NM_018240	KIRREL	0.752907	1.997682e-20	3.461383e-16	1.281994e-17
28	7996819	8100902	NM_032217	ANKRD17	-0.752864	2.013114e-20	3.488123e-16	1.245758e-17
29	7996819	7927179	NM_001123376	TMEM72	0.752631	2.099513e-20	3.637826e-16	1.254423e-17
30	7996819	8014706	NM_007144	PCGF2	0.752617	2.104617e-20	3.646669e-16	1.215556e-17
31	7996819	7934367	NM_004034	ANXA7	-0.751489	2.577276e-20	4.465646e-16	1.440531e-17
32	7996819	8043283	NM_018433	KDM3A	-0.750611	3.015701e-20	5.225306e-16	1.632908e-17
33	7996819	7947744	NM_002334	LRP4	0.750118	3.292178e-20	5.704358e-16	1.728593e-17
34	7996819	7945688	NR_003512	INS-IGF2	0.748820	4.145190e-20	7.182370e-16	2.112462e-17
35	7996819	8054740	NM_003466	PAX8	0.748659	4.264248e-20	7.388663e-16	2.111047e-17
36	7996819	8005879	NR_027384	SLC13A2	0.747968	4.817303e-20	8.346940e-16	2.318594e-17
37	7996819	8061529	NM_014012	REM1	0.747858	4.911547e-20	8.510238e-16	2.300064e-17
38	7996819	7923360	NM_003281	TNNI1	0.747778	4.981888e-20	8.632118e-16	2.271610e-17
39	7996819	7935983	NM_005029	PITX3	0.747008	5.702639e-20	9.880962e-16	2.533580e-17
40	7996819	8049509	NM_015893	PRLH	0.746360	6.388570e-20	1.106948e-15	2.767369e-17
41	7996819	7966542	NM_004658	RASAL1	0.744976	8.130808e-20	1.408825e-15	3.436159e-17
42	7996819	8089729	NM_001015887	IGSF11	0.743937	9.734618e-20	1.686717e-15	4.015993e-17
43	7996819	8121209	NM_005604	POU3F2	0.742057	1.345524e-19	2.331390e-15	5.421836e-17
44	7996819	8062782	NM_032883	TOX2	0.741687	1.433493e-19	2.483813e-15	5.645030e-17
45	7996819	8070933	NM_006657	FTCD	0.741432	1.497398e-19	2.594541e-15	5.765648e-17
46	7996819	7910265	NM_001098623	OBSCN	0.740191	1.850257e-19	3.205941e-15	6.969437e-17
47	7996819	7927307	NM_001630	ANXA8L2	0.739924	1.935807e-19	3.354173e-15	7.136539e-17
48	7996819	8153346	NM_023946	LYNX1	0.739643	2.030317e-19	3.517930e-15	7.329021e-17
49	7996819	7952766	ENST00000417822		0.739290	2.155655e-19	3.735103e-15	7.622660e-17
50	7996819	8100714	NM_001031732	YTHDC1	-0.738776	2.351305e-19	4.074106e-15	8.148212e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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