[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6974	8159078	NM_017586	C9orf7		chromosome 9 open reading frame 7

Fetching correlation data, please wait...
Getting list of correlations for id 6974.
Getting list of p-values for id 6974.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8159078	8032465	NM_144616	JSRP1	0.789402	1.469233e-23	2.545740e-19	2.545740e-19
2	8159078	8151619	NR_003594	REXO1L2P	0.763074	3.051025e-21	5.286512e-17	2.643256e-17
3	8159078	8164077	NM_004959	NR5A1	0.762889	3.160148e-21	5.475588e-17	1.825196e-17
4	8159078	7927367	NM_001040084	ANXA8	0.761173	4.366295e-21	7.565479e-17	1.891370e-17
5	8159078	7927307	NM_001630	ANXA8L2	0.760075	5.363031e-21	9.292524e-17	1.858505e-17
6	8159078	8038299	NM_033142	CGB7	0.757655	8.402305e-21	1.455867e-16	2.426446e-17
7	8159078	8030181	NM_033378	CGB2	0.755474	1.253735e-20	2.172346e-16	3.103351e-17
8	8159078	7992758	NM_172229	KREMEN2	0.754735	1.434616e-20	2.485759e-16	3.107199e-17
9	8159078	8151627			0.753289	1.864442e-20	3.230518e-16	3.589464e-17
10	8159078	8137330	ENST00000356058		0.752378	2.197367e-20	3.807377e-16	3.807377e-17
11	8159078	8064014	NM_022082	SLC17A9	0.751255	2.687592e-20	4.656791e-16	4.233447e-17
12	8159078	8048551	NM_005876	SPEG	0.750202	3.243388e-20	5.619819e-16	4.683183e-17
13	8159078	8151603	NR_003594	REXO1L2P	0.748768	4.182831e-20	7.247592e-16	5.575071e-17
14	8159078	8151623	NR_003594	REXO1L2P	0.748768	4.182831e-20	7.247592e-16	5.176851e-17
15	8159078	8151607	NR_003594	REXO1L2P	0.748768	4.182831e-20	7.247592e-16	4.831728e-17
16	8159078	7991893	BC016613	C16orf11	0.747769	4.988949e-20	8.644352e-16	5.402720e-17
17	8159078	7985025	NM_175881	ODF3L1	0.747093	5.618428e-20	9.735050e-16	5.726500e-17
18	8159078	8119435	NM_004828	NCR2	0.746581	6.146058e-20	1.064928e-15	5.916264e-17
19	8159078	8038288	NM_033377	CGB1	0.746153	6.623636e-20	1.147677e-15	6.040407e-17
20	8159078	8019576	NM_033184	KRTAP2-4	0.744286	9.164292e-20	1.587897e-15	7.939484e-17
21	8159078	8015210	NM_033184	KRTAP2-4	0.744286	9.164292e-20	1.587897e-15	7.561413e-17
22	8159078	7905490	NM_178434	LCE3C	0.742866	1.171045e-19	2.029069e-15	9.223041e-17
23	8159078	8151615			0.742143	1.325961e-19	2.297493e-15	9.989098e-17
24	8159078	7913450	NM_005529	HSPG2	0.742092	1.337562e-19	2.317594e-15	9.656643e-17
25	8159078	7931764	NM_018702	ADARB2	0.741099	1.584964e-19	2.746267e-15	1.098507e-16
26	8159078	7976681	NM_006668	CYP46A1	0.740634	1.715902e-19	2.973144e-15	1.143517e-16
27	8159078	7987701	NM_016642	SPTBN5	0.739023	2.255173e-19	3.907539e-15	1.447237e-16
28	8159078	7899075	NM_004455	EXTL1	0.738353	2.525141e-19	4.375312e-15	1.562612e-16
29	8159078	8151609	NM_172239	REXO1L1	0.738305	2.545681e-19	4.410901e-15	1.521000e-16
30	8159078	8112121	NM_173514	SLC38A9	-0.738179	2.600388e-19	4.505693e-15	1.501898e-16
31	8159078	7929840	NM_003987	PAX2	0.737474	2.927377e-19	5.072266e-15	1.636215e-16
32	8159078	8031084	NM_031895	CACNG8	0.735693	3.942736e-19	6.831578e-15	2.134868e-16
33	8159078	7923628	NM_198447	GOLT1A	0.734590	4.734959e-19	8.204263e-15	2.486140e-16
34	8159078	8038280	NM_000737	CGB	0.734549	4.767559e-19	8.260750e-15	2.429632e-16
35	8159078	7937560	NM_002457	MUC2	0.734159	5.085635e-19	8.811881e-15	2.517680e-16
36	8159078	7955702	NM_003578	SOAT2	0.733692	5.493110e-19	9.517911e-15	2.643864e-16
37	8159078	8029458	NM_001039213	CEACAM16	0.733531	5.641269e-19	9.774626e-15	2.641791e-16
38	8159078	8029446	NM_001127893	CEACAM19	0.732803	6.358962e-19	1.101817e-14	2.899519e-16
39	8159078	8157804	NM_182487	OLFML2A	0.732778	6.385550e-19	1.106424e-14	2.836985e-16
40	8159078	8063057	NM_033421	SNX21	0.732132	7.099639e-19	1.230154e-14	3.075386e-16
41	8159078	8024605	NM_021938	CELF5	0.731856	7.428017e-19	1.287053e-14	3.139153e-16
42	8159078	7908437	NM_024529	CDC73	-0.731310	8.120964e-19	1.407119e-14	3.350284e-16
43	8159078	8074131	NM_001080420	SHANK3	0.730570	9.161638e-19	1.587437e-14	3.691714e-16
44	8159078	7911435	NM_001014980	FAM132A	0.730562	9.173973e-19	1.589574e-14	3.612669e-16
45	8159078	8026900	NM_002248	KCNN1	0.730127	9.845731e-19	1.705970e-14	3.791044e-16
46	8159078	8024100	NM_138690	GRIN3B	0.730061	9.951964e-19	1.724377e-14	3.748645e-16
47	8159078	8151631	NR_003594	REXO1L2P	0.729941	1.014703e-18	1.758175e-14	3.740799e-16
48	8159078	8048272	BC052750	C2orf62	0.728236	1.336667e-18	2.316043e-14	4.825089e-16
49	8159078	8003939	NM_003963	TM4SF5	0.727149	1.591848e-18	2.758194e-14	5.628968e-16
50	8159078	8054740	NM_003466	PAX8	0.726454	1.779030e-18	3.082526e-14	6.165052e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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