[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1021	7955702	NM_003578	SOAT2		sterol O-acyltransferase 2

Fetching correlation data, please wait...
Getting list of correlations for id 1021.
Getting list of p-values for id 1021.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7955702	7914667	NM_052896	CSMD2	0.782896	5.883229e-23	1.019387e-18	1.019387e-18
2	7955702	7927367	NM_001040084	ANXA8	0.773791	3.791600e-22	6.569706e-18	3.284853e-18
3	7955702	7927307	NM_001630	ANXA8L2	0.767587	1.285242e-21	2.226938e-17	7.423128e-18
4	7955702	8064014	NM_022082	SLC17A9	0.767437	1.323330e-21	2.292934e-17	5.732336e-18
5	7955702	8156415	NM_006648	WNK2	0.764363	2.388401e-21	4.138382e-17	8.276764e-18
6	7955702	7987701	NM_016642	SPTBN5	0.764020	2.549684e-21	4.417837e-17	7.363062e-18
7	7955702	8112072	NM_021147	CCNO	0.763601	2.760960e-21	4.783915e-17	6.834164e-18
8	7955702	8107897	NM_003687	PDLIM4	0.762471	3.419690e-21	5.925296e-17	7.406620e-18
9	7955702	8083887	NM_005602	CLDN11	0.761341	4.230753e-21	7.330625e-17	8.145139e-18
10	7955702	7935983	NM_005029	PITX3	0.761145	4.389621e-21	7.605897e-17	7.605897e-18
11	7955702	7989887	NM_032445	MEGF11	0.759199	6.312845e-21	1.093827e-16	9.943879e-18
12	7955702	7913450	NM_005529	HSPG2	0.758875	6.704858e-21	1.161751e-16	9.681256e-18
13	7955702	8004842	NM_173728	ARHGEF15	0.757865	8.082586e-21	1.400470e-16	1.077284e-17
14	7955702	8068496	NM_009586	SIM2	0.756839	9.765641e-21	1.692093e-16	1.208638e-17
15	7955702	8008228	NM_138281	DLX4	0.756326	1.072800e-20	1.858840e-16	1.239227e-17
16	7955702	8163678	NM_198186	ASTN2	0.753733	1.720780e-20	2.981595e-16	1.863497e-17
17	7955702	7966189	NM_213596	FOXN4	0.752631	2.099583e-20	3.637948e-16	2.139969e-17
18	7955702	7991893	BC016613	C16orf11	0.752161	2.284743e-20	3.958774e-16	2.199319e-17
19	7955702	8151609	NM_172239	REXO1L1	0.751959	2.369180e-20	4.105078e-16	2.160567e-17
20	7955702	8038299	NM_033142	CGB7	0.751570	2.540447e-20	4.401833e-16	2.200916e-17
21	7955702	8028389	NM_001042522	SPRED3	0.750810	2.910012e-20	5.042178e-16	2.401037e-17
22	7955702	8028407	NM_000540	RYR1	0.749849	3.453872e-20	5.984524e-16	2.720238e-17
23	7955702	8048551	NM_005876	SPEG	0.749014	4.004970e-20	6.939412e-16	3.017135e-17
24	7955702	8075200	NM_012265	RHBDD3	0.748527	4.365183e-20	7.563553e-16	3.151480e-17
25	7955702	7963142	NM_012306	FAIM2	0.748496	4.389065e-20	7.604932e-16	3.041973e-17
26	7955702	7936144	NM_000494	COL17A1	0.748488	4.395052e-20	7.615307e-16	2.928964e-17
27	7955702	7918416	NM_006492	ALX3	0.748219	4.608677e-20	7.985454e-16	2.957576e-17
28	7955702	7899075	NM_004455	EXTL1	0.747741	5.014029e-20	8.687807e-16	3.102788e-17
29	7955702	8024306	NM_005883	APC2	0.747278	5.439377e-20	9.424808e-16	3.249934e-17
30	7955702	8026900	NM_002248	KCNN1	0.747231	5.484207e-20	9.502486e-16	3.167495e-17
31	7955702	7955305	NM_001652	AQP6	0.746611	6.114026e-20	1.059377e-15	3.417346e-17
32	7955702	7955184	NM_006262	PRPH	0.745365	7.599794e-20	1.316816e-15	4.115051e-17
33	7955702	7936762	NM_001001976	ATE1	-0.744875	8.275379e-20	1.433875e-15	4.345076e-17
34	7955702	7907882	NM_020950	KIAA1614	0.744751	8.454696e-20	1.464945e-15	4.308662e-17
35	7955702	8179070	NM_033229	TRIM15	0.744419	8.955512e-20	1.551722e-15	4.433490e-17
36	7955702	8117849	NM_033229	TRIM15	0.744419	8.955512e-20	1.551722e-15	4.310338e-17
37	7955702	8177760	NM_033229	TRIM15	0.744419	8.955512e-20	1.551722e-15	4.193842e-17
38	7955702	8074131	NM_001080420	SHANK3	0.743789	9.986759e-20	1.730406e-15	4.553699e-17
39	7955702	7952227	NM_015645	C1QTNF5	0.743577	1.035999e-19	1.795075e-15	4.602757e-17
40	7955702	7914260	NM_002379	MATN1	0.743417	1.064952e-19	1.845242e-15	4.613104e-17
41	7955702	7995310	ENST00000319817		0.743388	1.070410e-19	1.854700e-15	4.523658e-17
42	7955702	7991138	NM_021077	NMB	0.742755	1.193653e-19	2.068243e-15	4.924388e-17
43	7955702	8037732	NM_001029861	NANOS2	0.742193	1.314453e-19	2.277553e-15	5.296634e-17
44	7955702	8159036	NM_139025	ADAMTS13	0.741483	1.484563e-19	2.572302e-15	5.846141e-17
45	7955702	7940022	NM_178570	RTN4RL2	0.740264	1.827260e-19	3.166093e-15	7.035763e-17
46	7955702	8025053	NM_003811	TNFSF9	0.739764	1.989358e-19	3.446961e-15	7.493393e-17
47	7955702	8119435	NM_004828	NCR2	0.739403	2.114906e-19	3.664497e-15	7.796802e-17
48	7955702	8010673	NM_012140	SLC25A10	0.739294	2.154243e-19	3.732656e-15	7.776367e-17
49	7955702	8060134	NM_004321	KIF1A	0.737987	2.685534e-19	4.653224e-15	9.496376e-17
50	7955702	7937560	NM_002457	MUC2	0.737150	3.090879e-19	5.355566e-15	1.071113e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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