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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
949 8049152 NM_000751 CHRND link to infopage cholinergic receptor, nicotinic, delta

Fetching correlation data, please wait...
Getting list of correlations for id 949.
Getting list of p-values for id 949.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.138 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8049152 7936762 NM_001001976 ATE1 link to infopage -0.809943 1.306508e-25 2.263787e-21 2.263787e-21
2 8049152 7952227 NM_015645 C1QTNF5 link to infopage 0.785188 3.628240e-23 6.286652e-19 3.143326e-19
3 8049152 8037688 NM_030785 RSPH6A link to infopage 0.779821 1.114846e-22 1.931694e-18 6.438981e-19
4 8049152 8015189 NM_030966 KRTAP1-3 link to infopage 0.774037 3.610081e-22 6.255187e-18 1.563797e-18
5 8049152 8019585 NM_030966 KRTAP1-3 link to infopage 0.774037 3.610081e-22 6.255187e-18 1.251037e-18
6 8049152 8177760 NM_033229 TRIM15 link to infopage 0.770208 7.710895e-22 1.336067e-17 2.226778e-18
7 8049152 8179070 NM_033229 TRIM15 link to infopage 0.770208 7.710895e-22 1.336067e-17 1.908667e-18
8 8049152 8117849 NM_033229 TRIM15 link to infopage 0.770208 7.710895e-22 1.336067e-17 1.670084e-18
9 8049152 8046922 NM_000090 COL3A1 link to infopage 0.766758 1.508863e-21 2.614407e-17 2.904897e-18
10 8049152 7987701 NM_016642 SPTBN5 link to infopage 0.766370 1.625911e-21 2.817217e-17 2.817217e-18
11 8049152 7897066 NR_024445 LOC100128003 link to infopage 0.766017 1.740324e-21 3.015460e-17 2.741327e-18
12 8049152 8072436 NM_001002837 INPP5J link to infopage 0.762072 3.687242e-21 6.388883e-17 5.324070e-18
13 8049152 8010768 link to infopage 0.760510 4.944446e-21 8.567241e-17 6.590186e-18
14 8049152 7913450 NM_005529 HSPG2 link to infopage 0.759485 5.985894e-21 1.037176e-16 7.408398e-18
15 8049152 7955589 NM_002135 NR4A1 link to infopage 0.758265 7.507174e-21 1.300768e-16 8.671787e-18
16 8049152 7997245 link to infopage 0.757229 9.088484e-21 1.574762e-16 9.842260e-18
17 8049152 7977978 NM_005864 EFS link to infopage 0.753662 1.742908e-20 3.019937e-16 1.776434e-17
18 8049152 8010113 NM_144677 MGAT5B link to infopage 0.751199 2.714878e-20 4.704069e-16 2.613372e-17
19 8049152 8082928 NM_001002026 CLDN18 link to infopage 0.750470 3.092086e-20 5.357657e-16 2.819819e-17
20 8049152 8112121 NM_173514 SLC38A9 link to infopage -0.748108 4.700399e-20 8.144381e-16 4.072190e-17
21 8049152 7970262 NM_001008895 CUL4A link to infopage -0.747407 5.317229e-20 9.213163e-16 4.387220e-17
22 8049152 8028407 NM_000540 RYR1 link to infopage 0.746371 6.375732e-20 1.104723e-15 5.021468e-17
23 8049152 8024754 NM_032607 CREB3L3 link to infopage 0.746369 6.377866e-20 1.105093e-15 4.804751e-17
24 8049152 7914667 NM_052896 CSMD2 link to infopage 0.746217 6.549811e-20 1.134886e-15 4.728691e-17
25 8049152 7989887 NM_032445 MEGF11 link to infopage 0.745106 7.950046e-20 1.377504e-15 5.510018e-17
26 8049152 7934367 NM_004034 ANXA7 link to infopage -0.745029 8.056638e-20 1.395974e-15 5.369130e-17
27 8049152 7937560 NM_002457 MUC2 link to infopage 0.744419 8.956690e-20 1.551926e-15 5.747873e-17
28 8049152 7955896 NM_016057 COPZ1 link to infopage -0.742629 1.219741e-19 2.113446e-15 7.548022e-17
29 8049152 8135099 NM_133457 EMID2 link to infopage 0.741553 1.466803e-19 2.541530e-15 8.763897e-17
30 8049152 7967337 NM_019625 ABCB9 link to infopage 0.741242 1.546762e-19 2.680075e-15 8.933583e-17
31 8049152 8013042 NM_000422 KRT17 link to infopage 0.740562 1.737002e-19 3.009703e-15 9.708721e-17
32 8049152 7942332 NM_016730 FOLR1 link to infopage 0.737829 2.758107e-19 4.778972e-15 1.493429e-16
33 8049152 8049942 NM_080741 NEU4 link to infopage 0.737014 3.161906e-19 5.478634e-15 1.660192e-16
34 8049152 7925972 NM_005185 CALML3 link to infopage 0.736687 3.340004e-19 5.787224e-15 1.702125e-16
35 8049152 8086595 NM_005283 XCR1 link to infopage 0.736385 3.513183e-19 6.087293e-15 1.739226e-16
36 8049152 7950701 NM_001098816 ODZ4 link to infopage 0.736236 3.601545e-19 6.240397e-15 1.733444e-16
37 8049152 7921936 NM_177398 LMX1A link to infopage 0.735363 4.164775e-19 7.216306e-15 1.950353e-16
38 8049152 8159211 NM_004108 FCN2 link to infopage 0.735213 4.270452e-19 7.399412e-15 1.947214e-16
39 8049152 8034151 NM_020812 DOCK6 link to infopage 0.734696 4.652991e-19 8.062238e-15 2.067240e-16
40 8049152 7997801 NM_013278 IL17C link to infopage 0.733560 5.614335e-19 9.727959e-15 2.431990e-16
41 8049152 7972899 BX647655 DKFZp451A211 link to infopage 0.733410 5.754824e-19 9.971384e-15 2.432045e-16
42 8049152 7936144 NM_000494 COL17A1 link to infopage 0.733158 5.998582e-19 1.039374e-14 2.474701e-16
43 8049152 7921552 NM_015726 DCAF8 link to infopage -0.732830 6.330669e-19 1.096915e-14 2.550965e-16
44 8049152 8115524 NM_014666 CLINT1 link to infopage -0.732641 6.530805e-19 1.131593e-14 2.571801e-16
45 8049152 8179713 NM_014070 C6orf15 link to infopage 0.732048 7.197867e-19 1.247174e-14 2.771499e-16
46 8049152 8131056 NM_017781 CYP2W1 link to infopage 0.731668 7.659969e-19 1.327243e-14 2.885310e-16
47 8049152 8178439 NM_014070 C6orf15 link to infopage 0.731260 8.187470e-19 1.418643e-14 3.018389e-16
48 8049152 7906284 NM_144702 C1orf92 link to infopage 0.731127 8.366957e-19 1.449743e-14 3.020297e-16
49 8049152 8088425 NM_138805 FAM3D link to infopage 0.731117 8.380321e-19 1.452058e-14 2.963384e-16
50 8049152 8110821 NM_001044 SLC6A3 link to infopage 0.729886 1.023842e-18 1.774010e-14 3.548021e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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