[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5335	8014066	NM_001003927	EVI2A		ecotropic viral integration site 2A

Fetching correlation data, please wait...
Getting list of correlations for id 5335.
Getting list of p-values for id 5335.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8014066	7988605	NM_004236	COPS2	0.780691	9.312972e-23	1.613659e-18	1.613659e-18
2	8014066	8135625	NM_006136	CAPZA2	0.778812	1.371886e-22	2.377067e-18	1.188533e-18
3	8014066	8083794	NM_018657	MYNN	0.775814	2.525128e-22	4.375289e-18	1.458430e-18
4	8014066	7908376	NM_130782	RGS18	0.774688	3.168129e-22	5.489416e-18	1.372354e-18
5	8014066	8142307	NM_015723	PNPLA8	0.773703	3.859345e-22	6.687086e-18	1.337417e-18
6	8014066	7988031	NM_001006	RPS3A	0.771917	5.504711e-22	9.538013e-18	1.589669e-18
7	8014066	8099887	NM_001024921	RPL9	0.770181	7.751910e-22	1.343174e-17	1.918819e-18
8	8014066	8141222	NM_001006	RPS3A	0.768298	1.119633e-21	1.939988e-17	2.424985e-18
9	8014066	7995258	NM_003414	ZNF267	0.767306	1.357184e-21	2.351593e-17	2.612881e-18
10	8014066	7990898	NM_000661	RPL9	0.766756	1.509452e-21	2.615428e-17	2.615428e-18
11	8014066	8171834	NM_000661	RPL9	0.766180	1.686593e-21	2.922360e-17	2.656691e-18
12	8014066	8085660	NM_206831	DPH3	0.765628	1.875154e-21	3.249079e-17	2.707566e-18
13	8014066	7990949	NM_000661	RPL9	0.765280	2.004649e-21	3.473456e-17	2.671889e-18
14	8014066	8097782	NM_001006	RPS3A	0.764209	2.459583e-21	4.261720e-17	3.044085e-18
15	8014066	7971565	NM_005767	LPAR6	0.763955	2.581525e-21	4.473008e-17	2.982006e-18
16	8014066	8141050	NM_001006	RPS3A	0.761311	4.254662e-21	7.372053e-17	4.607533e-18
17	8014066	7931754	NM_004508	IDI1	0.759539	5.925762e-21	1.026757e-16	6.039746e-18
18	8014066	7904036	NM_006135	CAPZA1	0.751606	2.524186e-20	4.373657e-16	2.429809e-17
19	8014066	8151401	NM_001001481	UBE2W	0.747546	5.188862e-20	8.990742e-16	4.731969e-17
20	8014066	8103222	GENSCAN00000040988		0.740537	1.744411e-19	3.022541e-15	1.511270e-16
21	8014066	7962013	NM_016570	ERGIC2	0.733741	5.448543e-19	9.440690e-15	4.495567e-16
22	8014066	8140967	NM_017654	SAMD9	0.733194	5.963130e-19	1.033232e-14	4.696507e-16
23	8014066	7929562	NM_014803	ZNF518A	0.724180	2.553935e-18	4.425203e-14	1.924001e-15
24	8014066	8081069	NM_018293	ZNF654	0.723214	2.974452e-18	5.153833e-14	2.147430e-15
25	8014066	8114653	NM_005642	TAF7	0.716429	8.526810e-18	1.477440e-13	5.909762e-15
26	8014066	8151376	NM_000971	RPL7	0.715646	9.608732e-18	1.664905e-13	6.403481e-15
27	8014066	7927267	NM_019054	FAM35A	0.715445	9.907541e-18	1.716680e-13	6.358073e-15
28	8014066	8109222	NM_000971	RPL7	0.715296	1.013626e-17	1.756310e-13	6.272536e-15
29	8014066	8105481	NM_152687	GAPT	0.712633	1.516633e-17	2.627871e-13	9.061623e-15
30	8014066	8131975	NM_006024	TAX1BP1	0.712311	1.591910e-17	2.758303e-13	9.194342e-15
31	8014066	7917771	NM_014597	DNTTIP2	0.711495	1.799365e-17	3.117759e-13	1.005729e-14
32	8014066	7901867	NM_003368	USP1	0.711132	1.899834e-17	3.291842e-13	1.028701e-14
33	8014066	7969979	NM_032859	ABHD13	0.709888	2.286881e-17	3.962479e-13	1.200751e-14
34	8014066	8171041	NM_005638	VAMP7	0.708742	2.711028e-17	4.697398e-13	1.381588e-14
35	8014066	8176962	NM_005638	VAMP7	0.708742	2.711028e-17	4.697398e-13	1.342114e-14
36	8014066	8157021	NM_015469	NIPSNAP3A	0.705419	4.418366e-17	7.655703e-13	2.126584e-14
37	8014066	7917906	NM_000971	RPL7	0.705071	4.648864e-17	8.055087e-13	2.177050e-14
38	8014066	7950544	NM_004705	PRKRIR	0.704054	5.389614e-17	9.338584e-13	2.457522e-14
39	8014066	8022473	NM_052911	ESCO1	0.703672	5.697362e-17	9.871820e-13	2.531236e-14
40	8014066	7921987	NM_019026	TMCO1	0.703404	5.922300e-17	1.026157e-12	2.565392e-14
41	8014066	8041197	NM_001127401	YPEL5	0.703109	6.180602e-17	1.070913e-12	2.611983e-14
42	8014066	7985202	NM_002789	PSMA4	0.701943	7.312349e-17	1.267011e-12	3.016692e-14
43	8014066	7957404	BC029120	C12orf26	0.701779	7.487884e-17	1.297426e-12	3.017269e-14
44	8014066	8131871	NM_138771	CCDC126	0.699177	1.086361e-16	1.882338e-12	4.278041e-14
45	8014066	7984112	NM_016530	RAB8B	0.698633	1.173641e-16	2.033569e-12	4.519041e-14
46	8014066	7902448	NM_001035006	RPL17	0.695519	1.820986e-16	3.155222e-12	6.859178e-14
47	8014066	7968670	NM_016617	UFM1	0.695489	1.828533e-16	3.168299e-12	6.741062e-14
48	8014066	8137250	NM_015660	GIMAP2	0.695385	1.855347e-16	3.214761e-12	6.697418e-14
49	8014066	8122818	BC011348	C6orf211	0.693674	2.355944e-16	4.082144e-12	8.330906e-14
50	8014066	7920244	NM_002964	S100A8	0.693009	2.583847e-16	4.477031e-12	8.954062e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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