[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3792	8145122	NM_001128431	SLC39A14		solute carrier family 39 (zinc transporter), member 14

Fetching correlation data, please wait...
Getting list of correlations for id 3792.
Getting list of p-values for id 3792.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8145122	7945125	BC113593	PRR10	0.682703	1.048276e-15	1.816348e-11	1.816348e-11
2	8145122	8074082	NM_152299	NCAPH2	0.681578	1.217330e-15	2.109267e-11	1.054634e-11
3	8145122	7943969	NM_213621	HTR3A	0.674841	2.937869e-15	5.090446e-11	1.696815e-11
4	8145122	7896865	NM_153254	TTLL10	0.674468	3.082746e-15	5.341475e-11	1.335369e-11
5	8145122	8085504	NM_001080423	GRIP2	0.673301	3.581806e-15	6.206196e-11	1.241239e-11
6	8145122	7960099	NM_170683	P2RX2	0.666730	8.233374e-15	1.426597e-10	2.377661e-11
7	8145122	7914667	NM_052896	CSMD2	0.666412	8.566660e-15	1.484345e-10	2.120493e-11
8	8145122	8084219	NM_017644	KLHL24	-0.658116	2.375780e-14	4.116514e-10	5.145642e-11
9	8145122	7927307	NM_001630	ANXA8L2	0.656562	2.866112e-14	4.966113e-10	5.517903e-11
10	8145122	7931097	NM_002775	HTRA1	0.654904	3.496644e-14	6.058635e-10	6.058635e-11
11	8145122	8076072	NM_152868	KCNJ4	0.653931	3.927110e-14	6.804504e-10	6.185913e-11
12	8145122	7927367	NM_001040084	ANXA8	0.652560	4.621927e-14	8.008413e-10	6.673678e-11
13	8145122	7983663	NM_005154	USP8	-0.652240	4.800562e-14	8.317934e-10	6.398411e-11
14	8145122	7898357	NM_020998	MST1	0.650580	5.840004e-14	1.011897e-9	7.227839e-11
15	8145122	7991138	NM_021077	NMB	0.650112	6.169776e-14	1.069037e-9	7.126914e-11
16	8145122	8053449	NM_001031738	TMEM150A	0.649545	6.594275e-14	1.142590e-9	7.141187e-11
17	8145122	8059028	NM_194302	CCDC108	0.649119	6.931536e-14	1.201027e-9	7.064866e-11
18	8145122	8102695			0.646544	9.355518e-14	1.621031e-9	9.005726e-11
19	8145122	7955578	NM_181711	GRASP	0.646464	9.443315e-14	1.636243e-9	8.611807e-11
20	8145122	8098421	ENST00000410927		0.646221	9.712005e-14	1.682799e-9	8.413995e-11
21	8145122	8025053	NM_003811	TNFSF9	0.645353	1.073737e-13	1.860464e-9	8.859352e-11
22	8145122	8027748	NM_021910	FXYD3	0.643905	1.268472e-13	2.197882e-9	9.990372e-11
23	8145122	8104281	NM_182632	SLC6A18	0.643548	1.321437e-13	2.289654e-9	9.955017e-11
24	8145122	8038347	NM_003598	TEAD2	0.641747	1.623368e-13	2.812810e-9	1.172004e-10
25	8145122	8026900	NM_002248	KCNN1	0.640634	1.842297e-13	3.192147e-9	1.276859e-10
26	8145122	8158987	NR_001275	CELP	0.640326	1.907720e-13	3.305507e-9	1.271349e-10
27	8145122	8035517	NM_000095	COMP	0.640095	1.958257e-13	3.393072e-9	1.256693e-10
28	8145122	8053872	NM_001002036	ASTL	0.639979	1.984206e-13	3.438035e-9	1.227869e-10
29	8145122	8144703			0.639743	2.037851e-13	3.530984e-9	1.217581e-10
30	8145122	8120022	NM_001253	CDC5L	-0.638687	2.295604e-13	3.977593e-9	1.325864e-10
31	8145122	8093440	NM_001004356	FGFRL1	0.638248	2.411927e-13	4.179147e-9	1.348112e-10
32	8145122	7932186	NM_001033858	DCLRE1C	-0.634897	3.507548e-13	6.077528e-9	1.899227e-10
33	8145122	8112072	NM_021147	CCNO	0.634248	3.769239e-13	6.530960e-9	1.979079e-10
34	8145122	8040278	NM_152391	PQLC3	-0.633837	3.944736e-13	6.835043e-9	2.010307e-10
35	8145122	8086222	NM_001099404	SCN5A	0.633515	4.087721e-13	7.082795e-9	2.023656e-10
36	8145122	8042119	NM_022894	PAPOLG	-0.632542	4.550974e-13	7.885473e-9	2.190409e-10
37	8145122	7992271	NM_016111	TELO2	0.631572	5.062627e-13	8.772013e-9	2.370814e-10
38	8145122	7899075	NM_004455	EXTL1	0.630943	5.424073e-13	9.398291e-9	2.473234e-10
39	8145122	7929840	NM_003987	PAX2	0.630899	5.450627e-13	9.444301e-9	2.421616e-10
40	8145122	8048272	BC052750	C2orf62	0.630550	5.662749e-13	9.811845e-9	2.452961e-10
41	8145122	7960464	NM_000552	VWF	0.629683	6.224957e-13	1.078598e-8	2.630728e-10
42	8145122	8037788	NM_145056	DACT3	0.629233	6.537558e-13	1.132763e-8	2.697054e-10
43	8145122	7991779	NM_032039	ITFG3	0.629087	6.641899e-13	1.150842e-8	2.676376e-10
44	8145122	8173106	NM_198510	ITIH5L	0.627785	7.649740e-13	1.325470e-8	3.012433e-10
45	8145122	8073422	NM_003216	TEF	0.627327	8.037864e-13	1.392721e-8	3.094935e-10
46	8145122	7996423	NM_018378	FBXL8	0.626494	8.793648e-13	1.523675e-8	3.312338e-10
47	8145122	7950032	NM_002007	FGF4	0.626239	9.038517e-13	1.566104e-8	3.332136e-10
48	8145122	8068894	NR_026960	C21orf125	0.625845	9.430008e-13	1.633937e-8	3.404036e-10
49	8145122	7950701	NM_001098816	ODZ4	0.625438	9.852208e-13	1.707092e-8	3.483861e-10
50	8145122	7896985	NM_080875	MIB2	0.625252	1.005041e-12	1.741435e-8	3.482870e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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