[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5225	8031956	NM_014347	ZNF324		zinc finger protein 324

Fetching correlation data, please wait...
Getting list of correlations for id 5225.
Getting list of p-values for id 5225.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8031956	8010638	NM_004712	HGS	0.553457	9.168961e-10	1.588706e-5	1.588706e-5
2	8031956	8137739	NM_001080453	INTS1	0.544109	1.984662e-9	3.438824e-5	1.719412e-5
3	8031956	7966343	ENST00000365465		-0.543235	2.130785e-9	3.692011e-5	1.230670e-5
4	8031956	8019296	NM_016538	SIRT7	0.530443	5.886611e-9	1.019973e-4	2.549933e-5
5	8031956	8029580	NM_006509	RELB	0.527418	7.439760e-9	1.289087e-4	2.578175e-5
6	8031956	8030158	NR_027882	BAX	0.525321	8.739329e-9	1.514264e-4	2.523773e-5
7	8031956	7924868	NM_145214	TRIM11	0.523522	1.002531e-8	1.737086e-4	2.481551e-5
8	8031956	8093013	NM_005781	TNK2	0.522998	1.043282e-8	1.807694e-4	2.259618e-5
9	8031956	8036242	NM_032878	ALKBH6	0.522869	1.053535e-8	1.825461e-4	2.028290e-5
10	8031956	8158240	NM_021109	TMSB4X	-0.522495	1.083822e-8	1.877939e-4	1.877939e-5
11	8031956	8030321	NM_153329	ALDH16A1	0.521634	1.156878e-8	2.004522e-4	1.822293e-5
12	8031956	8094408	NM_013367	ANAPC4	-0.520960	1.217246e-8	2.109123e-4	1.757602e-5
13	8031956	7952274	NM_002855	PVRL1	0.520156	1.293283e-8	2.240871e-4	1.723747e-5
14	8031956	8002342	ENST00000458775		-0.518791	1.432909e-8	2.482802e-4	1.773430e-5
15	8031956	7937415	NM_020901	PHRF1	0.517307	1.600946e-8	2.773959e-4	1.849306e-5
16	8031956	7941350	NM_032223	PCNXL3	0.517280	1.604185e-8	2.779571e-4	1.737232e-5
17	8031956	8000217	NM_015092	SMG1	-0.512793	2.236124e-8	3.874531e-4	2.279136e-5
18	8031956	8032076	NM_194460	RNF126	0.510074	2.728342e-8	4.727398e-4	2.626332e-5
19	8031956	8072825	NM_013365	GGA1	0.507766	3.225955e-8	5.589612e-4	2.941901e-5
20	8031956	8000649	ENST00000458775		-0.504125	4.190939e-8	7.261640e-4	3.630820e-5
21	8031956	8000690	ENST00000458775		-0.504125	4.190939e-8	7.261640e-4	3.457924e-5
22	8031956	8051799	NM_012205	HAAO	0.504018	4.223303e-8	7.317717e-4	3.326235e-5
23	8031956	7903281	NM_012243	SLC35A3	-0.503914	4.254812e-8	7.372312e-4	3.205353e-5
24	8031956	8064557	AK293638	FAM113A	0.501797	4.946752e-8	8.571236e-4	3.571349e-5
25	8031956	8064042	NM_175609	ARFGAP1	0.501242	5.144982e-8	8.914710e-4	3.565884e-5
26	8031956	7949808	NM_004910	PITPNM1	0.501005	5.231955e-8	9.065408e-4	3.486695e-5
27	8031956	7994565	NM_018427	RRN3	-0.500172	5.549459e-8	9.615548e-4	3.561314e-5
28	8031956	8159654	NM_015456	COBRA1	0.498396	6.287886e-8	1.089502e-3	3.891079e-5
29	8031956	7941127	NM_006782	ZFPL1	0.498380	6.295243e-8	1.090777e-3	3.761299e-5
30	8031956	8025551	NM_018381	C19orf66	0.498305	6.328481e-8	1.096536e-3	3.655120e-5
31	8031956	8018511	NM_032478	MRPL38	0.498182	6.383374e-8	1.106047e-3	3.567894e-5
32	8031956	8009844	NM_001031803	LLGL2	0.495908	7.482522e-8	1.296497e-3	4.051552e-5
33	8031956	7930454	NM_145341	PDCD4	-0.494003	8.539828e-8	1.479696e-3	4.483927e-5
34	8031956	8013947	NM_032854	CORO6	0.493578	8.794929e-8	1.523897e-3	4.482051e-5
35	8031956	8044263	NM_006267	RANBP2	-0.493361	8.927823e-8	1.546924e-3	4.419782e-5
36	8031956	8000200	NM_018427	RRN3	-0.492156	9.700740e-8	1.680847e-3	4.669020e-5
37	8031956	7959946	NM_016155	MMP17	0.491554	1.011049e-7	1.751844e-3	4.734715e-5
38	8031956	7949836	NM_005851	CDK2AP2	0.488675	1.230920e-7	2.132815e-3	5.612671e-5
39	8031956	8080121	NM_015926	TEX264	0.487684	1.316569e-7	2.281219e-3	5.849280e-5
40	8031956	8029592	NM_007056	SFRS16	0.487502	1.332883e-7	2.309487e-3	5.773717e-5
41	8031956	8019924	NM_006471	MYL12A	-0.487300	1.351273e-7	2.341351e-3	5.710612e-5
42	8031956	7965048	NM_004537	NAP1L1	-0.486389	1.437133e-7	2.490120e-3	5.928858e-5
43	8031956	8173613	NM_016120	RLIM	-0.485233	1.553607e-7	2.691935e-3	6.260315e-5
44	8031956	8064245	NM_198723	TCEA2	0.484455	1.636985e-7	2.836404e-3	6.446372e-5
45	8031956	8083094	NM_006506	RASA2	-0.484122	1.674025e-7	2.900582e-3	6.445739e-5
46	8031956	7994006	NM_015092	SMG1	-0.483767	1.714354e-7	2.970461e-3	6.457525e-5
47	8031956	8127943	NM_153816	SNX14	-0.483110	1.791352e-7	3.103875e-3	6.603990e-5
48	8031956	8064601	NM_023935	DDRGK1	0.482848	1.823006e-7	3.158723e-3	6.580673e-5
49	8031956	7941302	NM_001098785	FAM89B	0.481571	1.984927e-7	3.439283e-3	7.018945e-5
50	8031956	8087691	NM_001005505	CACNA2D2	0.481252	2.027398e-7	3.512873e-3	7.025745e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation