[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5855	7983206	NM_014444	TUBGCP4		tubulin, gamma complex associated protein 4

Fetching correlation data, please wait...
Getting list of correlations for id 5855.
Getting list of p-values for id 5855.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7983206	8064351	NM_177559	CSNK2A1	0.783661	5.009387e-23	8.679765e-19	8.679765e-19
2	7983206	8101376	NM_014933	SEC31A	0.776235	2.319165e-22	4.018417e-18	2.009208e-18
3	7983206	8147447	NM_014754	PTDSS1	0.746544	6.185712e-20	1.071798e-15	3.572661e-16
4	7983206	8099570	BC050697	DCAF16	0.737794	2.774064e-19	4.806620e-15	1.201655e-15
5	7983206	8174636	NM_006937	SUMO2	0.730908	8.671635e-19	1.502534e-14	3.005069e-15
6	7983206	7979849	NM_003861	DCAF5	0.729553	1.080618e-18	1.872386e-14	3.120644e-15
7	7983206	8066668	NM_020967	NCOA5	0.729405	1.106769e-18	1.917699e-14	2.739570e-15
8	7983206	8085000	NM_032773	LRCH3	0.725665	2.017654e-18	3.495990e-14	4.369987e-15
9	7983206	8178322	NM_006937	SUMO2	0.725616	2.033291e-18	3.523083e-14	3.914537e-15
10	7983206	8062349	NM_002951	RPN2	0.725325	2.129763e-18	3.690241e-14	3.690241e-15
11	7983206	8014551	NM_007247	SYNRG	0.724674	2.361400e-18	4.091598e-14	3.719635e-15
12	7983206	8136401	NM_015135	NUP205	0.724271	2.517156e-18	4.361477e-14	3.634564e-15
13	7983206	7997099	NM_012426	SF3B3	0.722535	3.309361e-18	5.734129e-14	4.410869e-15
14	7983206	7908732	NM_018085	IPO9	0.722179	3.500022e-18	6.064488e-14	4.331777e-15
15	7983206	7948332	NM_004811	LPXN	0.719559	5.265953e-18	9.124316e-14	6.082878e-15
16	7983206	7931187	NM_004725	BUB3	0.719498	5.315282e-18	9.209790e-14	5.756119e-15
17	7983206	8014841	NM_004774	MED1	0.717999	6.700705e-18	1.161031e-13	6.829595e-15
18	7983206	8145636	NM_024567	HMBOX1	0.715884	9.267001e-18	1.605693e-13	8.920518e-15
19	7983206	7915882	NM_014774	KIAA0494	0.714793	1.094107e-17	1.895759e-13	9.977680e-15
20	7983206	7996947	NM_030579	CYB5B	0.711320	1.847101e-17	3.200472e-13	1.600236e-14
21	7983206	8054614	NM_022662	ANAPC1	0.710332	2.140737e-17	3.709255e-13	1.766312e-14
22	7983206	8175420	NM_002139	RBMX	0.710260	2.163783e-17	3.749187e-13	1.704176e-14
23	7983206	7967149	NM_016237	ANAPC5	0.708961	2.624531e-17	4.547524e-13	1.977184e-14
24	7983206	8103106	NM_006726	LRBA	0.708483	2.817018e-17	4.881047e-13	2.033770e-14
25	7983206	8046306	NM_015530	GORASP2	0.708254	2.913614e-17	5.048419e-13	2.019368e-14
26	7983206	8154793	NM_002504	NFX1	0.707832	3.101170e-17	5.373398e-13	2.066691e-14
27	7983206	8092035	NM_024947	PHC3	0.707566	3.225215e-17	5.588330e-13	2.069752e-14
28	7983206	8018315	NM_006937	SUMO2	0.707338	3.335156e-17	5.778825e-13	2.063866e-14
29	7983206	7916443	NM_015306	USP24	0.707324	3.342257e-17	5.791129e-13	1.996941e-14
30	7983206	8090091	NM_198402	PTPLB	0.707111	3.448694e-17	5.975552e-13	1.991851e-14
31	7983206	8130567	NM_030752	TCP1	0.706018	4.048427e-17	7.014709e-13	2.262809e-14
32	7983206	7999478	NM_015914	TXNDC11	0.706014	4.050677e-17	7.018608e-13	2.193315e-14
33	7983206	8083282	NM_032383	HPS3	0.705129	4.609714e-17	7.987251e-13	2.420379e-14
34	7983206	8001666	NM_001896	CSNK2A2	0.704991	4.703301e-17	8.149410e-13	2.396885e-14
35	7983206	7976200	NM_006888	CALM1	0.704737	4.880656e-17	8.456712e-13	2.416204e-14
36	7983206	8100251	NM_015030	FRYL	0.704455	5.085220e-17	8.811161e-13	2.447545e-14
37	7983206	8132070	NM_002047	GARS	0.704217	5.263684e-17	9.120385e-13	2.464969e-14
38	7983206	8089701	NM_015642	ZBTB20	0.703710	5.665484e-17	9.816584e-13	2.583311e-14
39	7983206	8087951	NM_018165	PBRM1	0.703054	6.229720e-17	1.079424e-12	2.767753e-14
40	7983206	8021228	NM_005359	SMAD4	0.702883	6.386136e-17	1.106526e-12	2.766314e-14
41	7983206	8142912	NM_032842	TMEM209	0.702619	6.634434e-17	1.149548e-12	2.803776e-14
42	7983206	7899688	NM_012316	KPNA6	0.702156	7.091654e-17	1.228771e-12	2.925645e-14
43	7983206	8001693	NM_016284	CNOT1	0.701574	7.710820e-17	1.336054e-12	3.107102e-14
44	7983206	8023561	NM_005570	LMAN1	0.700544	8.937934e-17	1.548676e-12	3.519718e-14
45	7983206	8051204	NM_014860	SUPT7L	0.700448	9.062361e-17	1.570235e-12	3.489412e-14
46	7983206	7982957	NM_001080541	MGA	0.699970	9.702268e-17	1.681112e-12	3.654591e-14
47	7983206	8092095	NM_015028	TNIK	0.699867	9.846093e-17	1.706033e-12	3.629856e-14
48	7983206	8133504	NM_032999	GTF2I	0.698883	1.132694e-16	1.962618e-12	4.088788e-14
49	7983206	8179174	NM_178014	TUBB	0.698594	1.180151e-16	2.044848e-12	4.173158e-14
50	7983206	8177858	NM_178014	TUBB	0.698594	1.180151e-16	2.044848e-12	4.089695e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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