[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1487	8069700	NM_013240	N6AMT1		N-6 adenine-specific DNA methyltransferase 1 (putative)

Fetching correlation data, please wait...
Getting list of correlations for id 1487.
Getting list of p-values for id 1487.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8069700	8010949	NM_016080	GLOD4	0.526227	8.153310e-9	1.412724e-4	1.412724e-4
2	8069700	8068375	NM_058182	FAM165B	0.520661	1.245094e-8	2.157375e-4	1.078688e-4
3	8069700	8054664	NM_032494	ZC3H8	0.519032	1.407241e-8	2.438326e-4	8.127755e-5
4	8069700	8052624	AK094167	FLJ36848	-0.510108	2.721619e-8	4.715749e-4	1.178937e-4
5	8069700	7979565	NM_080666	WDR89	0.505594	3.772288e-8	6.536244e-4	1.307249e-4
6	8069700	8102311	NM_001226	CASP6	0.502319	4.766611e-8	8.259107e-4	1.376518e-4
7	8069700	7990379	NM_001142443	EDC3	0.502064	4.853735e-8	8.410067e-4	1.201438e-4
8	8069700	8080438	NM_014041	SPCS1	0.498594	6.201492e-8	1.074532e-3	1.343166e-4
9	8069700	8155268	NM_022490	POLR1E	0.491400	1.021812e-7	1.770494e-3	1.967216e-4
10	8069700	8030368	NM_001015	RPS11	0.490382	1.095569e-7	1.898293e-3	1.898293e-4
11	8069700	7960131	ENST00000425052		0.484759	1.603933e-7	2.779135e-3	2.526486e-4
12	8069700	8027233	NM_033204	ZNF101	0.484095	1.677028e-7	2.905786e-3	2.421489e-4
13	8069700	8002987	NM_020188	C16orf61	0.480959	2.067314e-7	3.582035e-3	2.755411e-4
14	8069700	8162449	NM_031486	ZNF484	0.480893	2.076361e-7	3.597710e-3	2.569793e-4
15	8069700	8064833	NM_001009924	C20orf30	0.480244	2.167601e-7	3.755802e-3	2.503868e-4
16	8069700	8161829	BC034033	C9orf41	0.478465	2.437796e-7	4.223969e-3	2.639981e-4
17	8069700	7991630	NM_078474	TM2D3	0.478461	2.438536e-7	4.225252e-3	2.485442e-4
18	8069700	8036333	NM_020951	ZNF529	0.473964	3.272111e-7	5.669587e-3	3.149771e-4
19	8069700	7967084	NM_015918	POP5	0.471699	3.788224e-7	6.563856e-3	3.454661e-4
20	8069700	7914996	BX538212	MEAF6	0.471576	3.818362e-7	6.616075e-3	3.308038e-4
21	8069700	8081277	NM_020202	NIT2	0.471449	3.849705e-7	6.670383e-3	3.176373e-4
22	8069700	8117194	NM_020662	MRS2	0.470512	4.088830e-7	7.084715e-3	3.220325e-4
23	8069700	8147994	NM_032334	UTP23	0.470336	4.135440e-7	7.165476e-3	3.115424e-4
24	8069700	7901804	NM_176877	INADL	0.469893	4.254492e-7	7.371758e-3	3.071566e-4
25	8069700	8172307	NM_007130	ZNF41	0.469120	4.470209e-7	7.745532e-3	3.098213e-4
26	8069700	8056766	NM_003705	SLC25A12	0.468930	4.524971e-7	7.840418e-3	3.015545e-4
27	8069700	8009561	NM_000999	RPL38	0.467356	5.002509e-7	8.667847e-3	3.210314e-4
28	8069700	7905938	NM_018845	RAG1AP1	0.465596	5.592626e-7	9.690344e-3	3.460837e-4
29	8069700	8059969	NM_030768	ILKAP	0.464852	5.861620e-7	1.015643e-2	3.502217e-4
30	8069700	7968898	BC039586	KIAA1704	0.464291	6.072643e-7	1.052207e-2	3.507356e-4
31	8069700	8048340	NM_005444	RQCD1	0.462287	6.886669e-7	1.193253e-2	3.849204e-4
32	8069700	8160016	NM_012416	RANBP6	0.462268	6.894500e-7	1.194610e-2	3.733156e-4
33	8069700	8083011	NM_020191	MRPS22	0.461001	7.462075e-7	1.292954e-2	3.918042e-4
34	8069700	8131479	NM_019005	MIOS	0.459167	8.362671e-7	1.449000e-2	4.261765e-4
35	8069700	8160033	NM_003094	SNRPE	0.458554	8.685852e-7	1.504998e-2	4.299993e-4
36	8069700	8046848	NM_018471	ZC3H15	0.458182	8.887890e-7	1.540005e-2	4.277791e-4
37	8069700	7966448	NM_138341	TMEM116	0.457693	9.159764e-7	1.587112e-2	4.289493e-4
38	8069700	8047265	NM_024520	C2orf47	0.456692	9.742060e-7	1.688007e-2	4.442123e-4
39	8069700	8163964	NM_005388	PDCL	0.456170	1.005967e-6	1.743038e-2	4.469329e-4
40	8069700	8005471	NM_001031	RPS28	0.455712	1.034565e-6	1.792591e-2	4.481478e-4
41	8069700	8093336	NM_003441	ZNF141	0.455532	1.046058e-6	1.812506e-2	4.420745e-4
42	8069700	8112857	NM_001010891	MTX3	0.454831	1.091875e-6	1.891892e-2	4.504505e-4
43	8069700	8146225	NM_001135674	C8orf40	0.454314	1.126894e-6	1.952570e-2	4.540860e-4
44	8069700	8061138	NM_020536	CSRP2BP	0.454289	1.128592e-6	1.955512e-2	4.444345e-4
45	8069700	8000236	NM_001802	CDR2	0.453581	1.178390e-6	2.041796e-2	4.537325e-4
46	8069700	7950082	AK131288		0.453272	1.200710e-6	2.080470e-2	4.522761e-4
47	8069700	7970569	NM_014363	SACS	0.452352	1.269654e-6	2.199930e-2	4.680703e-4
48	8069700	7934050	NM_152707	SLC25A16	0.451773	1.315021e-6	2.278536e-2	4.746950e-4
49	8069700	7965471	NM_003348	UBE2N	0.451300	1.353110e-6	2.344534e-2	4.784764e-4
50	8069700	8171837	NM_030624	KLHL15	0.450984	1.379235e-6	2.389800e-2	4.779600e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation