[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1883	8116253	NM_000843	GRM6		glutamate receptor, metabotropic 6

Fetching correlation data, please wait...
Getting list of correlations for id 1883.
Getting list of p-values for id 1883.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116253	8124862	NM_001264	CDSN	0.749142	3.915255e-20	6.783962e-16	6.783962e-16
2	8116253	7977216	NM_015656	KIF26A	0.739637	2.032459e-19	3.521641e-15	1.760820e-15
3	8116253	8021199	NM_002747	MAPK4	0.732555	6.623706e-19	1.147690e-14	3.825632e-15
4	8116253	8178442	NM_001264	CDSN	0.730482	9.293456e-19	1.610277e-14	4.025693e-15
5	8116253	8153838	NM_004260	RECQL4	0.730021	1.001689e-18	1.735627e-14	3.471253e-15
6	8116253	8010287	NM_030968	C1QTNF1	0.728621	1.256241e-18	2.176689e-14	3.627816e-15
7	8116253	8067409	NM_005560	LAMA5	0.725538	2.058766e-18	3.567224e-14	5.096034e-15
8	8116253	7942123	NM_053056	CCND1	0.724596	2.391084e-18	4.143030e-14	5.178788e-15
9	8116253	8059186	NM_002846	PTPRN	0.723534	2.827860e-18	4.899833e-14	5.444259e-15
10	8116253	8179716	NM_001264	CDSN	0.722842	3.153582e-18	5.464212e-14	5.464212e-15
11	8116253	8076007	NM_025045	BAIAP2L2	0.722722	3.213956e-18	5.568822e-14	5.062566e-15
12	8116253	7897416	NM_001080397	SLC45A1	0.719583	5.246025e-18	9.089788e-14	7.574823e-15
13	8116253	7918394	NM_139053	EPS8L3	0.719323	5.461852e-18	9.463751e-14	7.279808e-15
14	8116253	7972177	NM_006237	POU4F1	0.717291	7.471012e-18	1.294502e-13	9.246445e-15
15	8116253	7913450	NM_005529	HSPG2	0.716033	9.059106e-18	1.569671e-13	1.046448e-14
16	8116253	8110821	NM_001044	SLC6A3	0.714934	1.070994e-17	1.855712e-13	1.159820e-14
17	8116253	7913290	NM_001103161	SH2D5	0.713334	1.364567e-17	2.364385e-13	1.390814e-14
18	8116253	7897196	NM_152492	CCDC27	0.712825	1.473551e-17	2.553222e-13	1.418457e-14
19	8116253	8036460	NM_004647	DPF1	0.711477	1.803996e-17	3.125784e-13	1.645149e-14
20	8116253	7997245			0.711140	1.897567e-17	3.287915e-13	1.643957e-14
21	8116253	7967337	NM_019625	ABCB9	0.710865	1.977037e-17	3.425612e-13	1.631244e-14
22	8116253	7931417	NM_001105521	JAKMIP3	0.709702	2.351061e-17	4.073683e-13	1.851674e-14
23	8116253	8030251	NM_017636	TRPM4	0.708686	2.733487e-17	4.736313e-13	2.059267e-14
24	8116253	8114550	NM_004883	NRG2	0.708579	2.777077e-17	4.811841e-13	2.004934e-14
25	8116253	8107530	ENST00000365222		0.708564	2.783116e-17	4.822305e-13	1.928922e-14
26	8116253	8058458	ENST00000327138		0.708439	2.835206e-17	4.912561e-13	1.889446e-14
27	8116253	7936762	NM_001001976	ATE1	-0.708154	2.957263e-17	5.124050e-13	1.897796e-14
28	8116253	7974771	NM_022495	C14orf135	-0.707828	3.102897e-17	5.376390e-13	1.920139e-14
29	8116253	8038670	NM_012427	KLK5	0.707157	3.425020e-17	5.934532e-13	2.046390e-14
30	8116253	8125383	NM_004557	NOTCH4	0.705505	4.363281e-17	7.560257e-13	2.520086e-14
31	8116253	7989887	NM_032445	MEGF11	0.704820	4.821735e-17	8.354620e-13	2.695039e-14
32	8116253	8035648	NM_001001524	TM6SF2	0.703661	5.705835e-17	9.886500e-13	3.089531e-14
33	8116253	7896798	NM_032129	PLEKHN1	0.703529	5.816562e-17	1.007836e-12	3.054048e-14
34	8116253	8080128	NM_000839	GRM2	0.702145	7.103453e-17	1.230815e-12	3.620045e-14
35	8116253	8026407	NM_033025	SYDE1	0.701913	7.344935e-17	1.272657e-12	3.636163e-14
36	8116253	8067610	NM_000744	CHRNA4	0.701869	7.390931e-17	1.280627e-12	3.557296e-14
37	8116253	8179070	NM_033229	TRIM15	0.701473	7.824300e-17	1.355716e-12	3.664099e-14
38	8116253	8177760	NM_033229	TRIM15	0.701473	7.824300e-17	1.355716e-12	3.567675e-14
39	8116253	8117849	NM_033229	TRIM15	0.701473	7.824300e-17	1.355716e-12	3.476196e-14
40	8116253	7943552	NM_015423	AASDHPPT	-0.701403	7.902988e-17	1.369351e-12	3.423377e-14
41	8116253	8150908	NM_017813	IMPAD1	-0.699518	1.034870e-16	1.793119e-12	4.373461e-14
42	8116253	8075118	NM_001887	CRYBB1	0.699454	1.044262e-16	1.809393e-12	4.308079e-14
43	8116253	8069083	AB209578	C21orf2	0.699357	1.058929e-16	1.834806e-12	4.266990e-14
44	8116253	7997801	NM_013278	IL17C	0.699151	1.090416e-16	1.889364e-12	4.294010e-14
45	8116253	7913547	NM_030761	WNT4	0.698256	1.238036e-16	2.145146e-12	4.766991e-14
46	8116253	8136080	NM_005631	SMO	0.698064	1.272286e-16	2.204490e-12	4.792369e-14
47	8116253	8028407	NM_000540	RYR1	0.697318	1.413846e-16	2.449771e-12	5.212280e-14
48	8116253	8172580	NM_005183	CACNA1F	0.697302	1.417045e-16	2.455314e-12	5.115238e-14
49	8116253	7945688	NR_003512	INS-IGF2	0.697089	1.460127e-16	2.529962e-12	5.163187e-14
50	8116253	8095048	NM_030917	FIP1L1	-0.696082	1.682693e-16	2.915603e-12	5.831206e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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