[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6752	7980152	NM_000428	LTBP2		latent transforming growth factor beta binding protein 2

Fetching correlation data, please wait...
Getting list of correlations for id 6752.
Getting list of p-values for id 6752.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7980152	7955305	NM_001652	AQP6	0.810293	1.199498e-25	2.078370e-21	2.078370e-21
2	7980152	7927367	NM_001040084	ANXA8	0.797310	2.543649e-24	4.407380e-20	2.203690e-20
3	7980152	7937560	NM_002457	MUC2	0.797109	2.662126e-24	4.612666e-20	1.537555e-20
4	7980152	7927307	NM_001630	ANXA8L2	0.795059	4.222911e-24	7.317039e-20	1.829260e-20
5	7980152	8004842	NM_173728	ARHGEF15	0.788451	1.804924e-23	3.127393e-19	6.254785e-20
6	7980152	8174389	NM_033641	COL4A6	0.783417	5.273838e-23	9.137980e-19	1.522997e-19
7	7980152	7946661	NM_015881	DKK3	0.778674	1.411221e-22	2.445223e-18	3.493175e-19
8	7980152	8131056	NM_017781	CYP2W1	0.778477	1.469311e-22	2.545875e-18	3.182344e-19
9	7980152	7928147	NM_139155	ADAMTS14	0.776609	2.150178e-22	3.725614e-18	4.139571e-19
10	7980152	8014269	NM_139285	GAS2L2	0.775994	2.435004e-22	4.219131e-18	4.219131e-19
11	7980152	8134827	NM_173564	C7orf51	0.773225	4.245063e-22	7.355421e-18	6.686747e-19
12	7980152	8083523	NM_003875	GMPS	-0.773040	4.405060e-22	7.632648e-18	6.360540e-19
13	7980152	8153101	NM_152888	COL22A1	0.773012	4.428974e-22	7.674084e-18	5.903141e-19
14	7980152	7974771	NM_022495	C14orf135	-0.772281	5.122041e-22	8.874960e-18	6.339257e-19
15	7980152	7931519	NM_152643	KNDC1	0.772230	5.173740e-22	8.964538e-18	5.976359e-19
16	7980152	8026407	NM_033025	SYDE1	0.771015	6.578861e-22	1.139919e-17	7.124495e-19
17	7980152	8098512	NM_021942	C4orf41	-0.770338	7.515727e-22	1.302250e-17	7.660295e-19
18	7980152	8009353	NM_181671	PITPNC1	-0.769997	8.035417e-22	1.392297e-17	7.734982e-19
19	7980152	7945688	NR_003512	INS-IGF2	0.769796	8.359390e-22	1.448432e-17	7.623324e-19
20	7980152	8067409	NM_005560	LAMA5	0.767438	1.323050e-21	2.292448e-17	1.146224e-18
21	7980152	8096556	NM_015143	METAP1	-0.766958	1.451535e-21	2.515074e-17	1.197654e-18
22	7980152	8060094	NM_148961	OTOS	0.766629	1.546711e-21	2.679986e-17	1.218175e-18
23	7980152	8125234	NM_019105	TNXB	0.766283	1.653448e-21	2.864929e-17	1.245621e-18
24	7980152	8125568	NM_080680	COL11A2	0.765391	1.962202e-21	3.399908e-17	1.416628e-18
25	7980152	7911683	NM_182533	C1orf86	0.765297	1.998063e-21	3.462045e-17	1.384818e-18
26	7980152	8034151	NM_020812	DOCK6	0.765140	2.058786e-21	3.567259e-17	1.372023e-18
27	7980152	8038150	NM_182574	MAMSTR	0.765131	2.062354e-21	3.573440e-17	1.323496e-18
28	7980152	8027040	NM_012109	TMEM59L	0.765067	2.088021e-21	3.617914e-17	1.292112e-18
29	7980152	8143247	NM_020910	KIAA1549	0.764953	2.133928e-21	3.697456e-17	1.274985e-18
30	7980152	7897132	NM_022114	PRDM16	0.764862	2.171335e-21	3.762273e-17	1.254091e-18
31	7980152	8110821	NM_001044	SLC6A3	0.764420	2.362385e-21	4.093304e-17	1.320421e-18
32	7980152	8157383	NM_032888	COL27A1	0.763154	3.005274e-21	5.207238e-17	1.627262e-18
33	7980152	7946860	NM_000352	ABCC8	0.762346	3.501435e-21	6.066936e-17	1.838465e-18
34	7980152	8026735	NM_133644	GTPBP3	0.761872	3.828475e-21	6.633599e-17	1.951058e-18
35	7980152	8074131	NM_001080420	SHANK3	0.760724	4.749822e-21	8.230017e-17	2.351433e-18
36	7980152	7973709	NM_004554	NFATC4	0.759468	6.004986e-21	1.040484e-16	2.890233e-18
37	7980152	7977418	NM_001134875	C14orf80	0.759298	6.197446e-21	1.073831e-16	2.902247e-18
38	7980152	8163548	NM_138424	KIF12	0.759131	6.393955e-21	1.107881e-16	2.915475e-18
39	7980152	7991893	BC016613	C16orf11	0.759057	6.481920e-21	1.123122e-16	2.879801e-18
40	7980152	8059028	NM_194302	CCDC108	0.758709	6.914594e-21	1.198092e-16	2.995229e-18
41	7980152	8123446	NM_022138	SMOC2	0.758539	7.135777e-21	1.236416e-16	3.015649e-18
42	7980152	7913450	NM_005529	HSPG2	0.757813	8.160547e-21	1.413978e-16	3.366614e-18
43	7980152	7911796	NR_024371	FLJ42875	0.757155	9.214203e-21	1.596545e-16	3.712895e-18
44	7980152	8159670	NM_006647	NOXA1	0.756761	9.904920e-21	1.716225e-16	3.900512e-18
45	7980152	8137783	NM_001097620	TMEM184A	0.756710	9.999874e-21	1.732678e-16	3.850396e-18
46	7980152	8132070	NM_002047	GARS	-0.756399	1.058672e-20	1.834361e-16	3.987741e-18
47	7980152	8133704	NM_001110199	SRRM3	0.756177	1.102616e-20	1.910502e-16	4.064899e-18
48	7980152	7949843	NM_016366	CABP2	0.755921	1.155414e-20	2.001986e-16	4.170803e-18
49	7980152	7959234	NM_000545	HNF1A	0.755544	1.238025e-20	2.145126e-16	4.377809e-18
50	7980152	7935983	NM_005029	PITX3	0.755339	1.285184e-20	2.226838e-16	4.453675e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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