[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2339	8113551	NM_001085377	MCC		mutated in colorectal cancers

Fetching correlation data, please wait...
Getting list of correlations for id 2339.
Getting list of p-values for id 2339.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8113551	7988050	NM_201631	TGM5	0.724680	2.359466e-18	4.088247e-14	4.088247e-14
2	8113551	8036072	NM_207392	KRTDAP	0.720811	4.334604e-18	7.510569e-14	3.755284e-14
3	8113551	8137783	NM_001097620	TMEM184A	0.717757	6.955315e-18	1.205147e-13	4.017158e-14
4	8113551	7906307	NM_018240	KIRREL	0.714784	1.095601e-17	1.898348e-13	4.745869e-14
5	8113551	7913450	NM_005529	HSPG2	0.713675	1.296111e-17	2.245772e-13	4.491543e-14
6	8113551	8084397	NM_014693	ECE2	0.713579	1.315020e-17	2.278536e-13	3.797559e-14
7	8113551	7944882	NM_022370	ROBO3	0.708047	3.004231e-17	5.205431e-13	7.436330e-14
8	8113551	7987701	NM_016642	SPTBN5	0.705131	4.607983e-17	7.984253e-13	9.980316e-14
9	8113551	8066757	NM_022829	SLC13A3	0.704620	4.964491e-17	8.601974e-13	9.557749e-14
10	8113551	7955305	NM_001652	AQP6	0.701979	7.275531e-17	1.260631e-12	1.260631e-13
11	8113551	7903632	NM_001408	CELSR2	0.698913	1.127809e-16	1.954155e-12	1.776505e-13
12	8113551	8137280	NM_000603	NOS3	0.697728	1.334251e-16	2.311857e-12	1.926548e-13
13	8113551	7949592	NM_004292	RIN1	0.695591	1.802655e-16	3.123460e-12	2.402662e-13
14	8113551	8075118	NM_001887	CRYBB1	0.692576	2.743951e-16	4.754444e-12	3.396032e-13
15	8113551	7977105	NM_152307	TRMT61A	0.690897	3.459247e-16	5.993837e-12	3.995891e-13
16	8113551	8071745	NM_182520	C22orf15	0.689817	4.011753e-16	6.951164e-12	4.344478e-13
17	8113551	7897469	NM_001130924	TMEM201	0.688611	4.730722e-16	8.196921e-12	4.821718e-13
18	8113551	7992954	AK098732	TRAP1	0.687560	5.457330e-16	9.455916e-12	5.253287e-13
19	8113551	8178448	NM_001105564	CCHCR1	0.687421	5.561672e-16	9.636709e-12	5.071952e-13
20	8113551	7967641	NM_133448	TMEM132D	0.686844	6.013387e-16	1.041940e-11	5.209698e-13
21	8113551	7931519	NM_152643	KNDC1	0.686640	6.181527e-16	1.071073e-11	5.100349e-13
22	8113551	8144315	BC026965	ARHGEF10	0.684558	8.181854e-16	1.417670e-11	6.443954e-13
23	8113551	8060101	AK092442	PP14571	0.684451	8.300245e-16	1.438184e-11	6.252972e-13
24	8113551	8115849			0.683384	9.573870e-16	1.658864e-11	6.911935e-13
25	8113551	7934367	NM_004034	ANXA7	-0.682993	1.008591e-15	1.747586e-11	6.990345e-13
26	8113551	8125383	NM_004557	NOTCH4	0.681241	1.272837e-15	2.205445e-11	8.482481e-13
27	8113551	8027920	NM_014209	ETV2	0.680157	1.468813e-15	2.545012e-11	9.425971e-13
28	8113551	8033674	NM_024690	MUC16	0.678845	1.745228e-15	3.023957e-11	1.079985e-12
29	8113551	7914103	NM_001029882	AHDC1	0.678750	1.767112e-15	3.061875e-11	1.055819e-12
30	8113551	7946860	NM_000352	ABCC8	0.678722	1.773620e-15	3.073152e-11	1.024384e-12
31	8113551	8176669	ENST00000384790		0.678594	1.803443e-15	3.124826e-11	1.008008e-12
32	8113551	8177189	ENST00000384790		0.678594	1.803443e-15	3.124826e-11	9.765082e-13
33	8113551	8013384	NM_000691	ALDH3A1	0.678562	1.811156e-15	3.138189e-11	9.509665e-13
34	8113551	7936144	NM_000494	COL17A1	0.678079	1.929177e-15	3.342685e-11	9.831428e-13
35	8113551	8059028	NM_194302	CCDC108	0.677900	1.974813e-15	3.421759e-11	9.776455e-13
36	8113551	7906284	NM_144702	C1orf92	0.677707	2.025266e-15	3.509179e-11	9.747719e-13
37	8113551	7927367	NM_001040084	ANXA8	0.677437	2.097939e-15	3.635100e-11	9.824594e-13
38	8113551	8019331	NM_001145113	MYADML2	0.676880	2.255626e-15	3.908323e-11	1.028506e-12
39	8113551	7927383	NM_153034	ZNF488	0.676690	2.312264e-15	4.006459e-11	1.027297e-12
40	8113551	8170513	NM_033085	FATE1	0.676678	2.315878e-15	4.012721e-11	1.003180e-12
41	8113551	7944341	NM_006760	UPK2	0.676215	2.459333e-15	4.261286e-11	1.039338e-12
42	8113551	7940530	NM_001127392	C11orf9	0.675786	2.600003e-15	4.505025e-11	1.072625e-12
43	8113551	8139367	NM_013389	NPC1L1	0.675720	2.622120e-15	4.543347e-11	1.056592e-12
44	8113551	8030582	NM_001145809	MYH14	0.675495	2.699559e-15	4.677525e-11	1.063074e-12
45	8113551	7925504	NM_001004343	MAP1LC3C	0.675279	2.776283e-15	4.810466e-11	1.068992e-12
46	8113551	8003193	BC093665	FAM92B	0.674789	2.957472e-15	5.124411e-11	1.114002e-12
47	8113551	7990309	NM_022369	STRA6	0.674491	3.073511e-15	5.325473e-11	1.133079e-12
48	8113551	8032699	NM_015174	ZFR2	0.674076	3.242124e-15	5.617629e-11	1.170339e-12
49	8113551	8030448	NM_001136052	CPT1C	0.673927	3.305046e-15	5.726654e-11	1.168705e-12
50	8113551	7943226	NM_001080486	FOLR4	0.673644	3.427252e-15	5.938399e-11	1.187680e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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