[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1295	8135069	NM_000602	SERPINE1		serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 1

Fetching correlation data, please wait...
Getting list of correlations for id 1295.
Getting list of p-values for id 1295.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8135069	7991602	NM_002570	PCSK6	0.628226	7.292632e-13	1.263594e-8	1.263594e-8
2	8135069	8079305	NM_003278	CLEC3B	0.627739	7.687619e-13	1.332034e-8	6.660169e-9
3	8135069	7948643	NM_013401	RAB3IL1	0.620645	1.640792e-12	2.843000e-8	9.476666e-9
4	8135069	8071234	NM_002688	SEPT5	0.619514	1.848266e-12	3.202491e-8	8.006227e-9
5	8135069	8100714	NM_001031732	YTHDC1	-0.614020	3.273931e-12	5.672740e-8	1.134548e-8
6	8135069	7991034	NM_199330	HOMER2	0.613820	3.342370e-12	5.791325e-8	9.652209e-9
7	8135069	7944972	BC036197	MGC39545	0.613525	3.445392e-12	5.969830e-8	8.528328e-9
8	8135069	8019699	NM_033059	KRTAP4-11	0.612448	3.848110e-12	6.667621e-8	8.334526e-9
9	8135069	8070681	AF426261	C21orf84	0.611397	4.284938e-12	7.424512e-8	8.249458e-9
10	8135069	8079021	NM_001904	CTNNB1	-0.610882	4.516482e-12	7.825708e-8	7.825708e-9
11	8135069	7897132	NM_022114	PRDM16	0.607704	6.233180e-12	1.080023e-7	9.818392e-9
12	8135069	8037614	NM_005282	GPR4	0.606050	7.360198e-12	1.275301e-7	1.062751e-8
13	8135069	8090639	NM_014602	PIK3R4	-0.605809	7.540160e-12	1.306484e-7	1.004987e-8
14	8135069	8071259	NM_002688	SEPT5	0.605184	8.026596e-12	1.390768e-7	9.934060e-9
15	8135069	7934553	NM_032772	ZNF503	0.605043	8.140651e-12	1.410531e-7	9.403538e-9
16	8135069	8100902	NM_032217	ANKRD17	-0.601988	1.102819e-11	1.910855e-7	1.194284e-8
17	8135069	8067011	NM_015339	ADNP	-0.599751	1.374412e-11	2.381445e-7	1.400850e-8
18	8135069	8025041	NM_139161	CRB3	0.597734	1.673820e-11	2.900227e-7	1.611237e-8
19	8135069	8019334	NM_178493	NOTUM	0.597713	1.677316e-11	2.906286e-7	1.529624e-8
20	8135069	8014706	NM_007144	PCGF2	0.596105	1.960718e-11	3.397336e-7	1.698668e-8
21	8135069	8143941	NM_198285	WDR86	0.595611	2.056758e-11	3.563745e-7	1.697022e-8
22	8135069	8044634	NM_012184	FOXD4L1	0.595069	2.167341e-11	3.755351e-7	1.706978e-8
23	8135069	8171786	NM_153270	KLHL34	0.594479	2.294057e-11	3.974913e-7	1.728223e-8
24	8135069	8148888	NM_032902	PPP1R16A	0.594162	2.365238e-11	4.098247e-7	1.707603e-8
25	8135069	8030721	NM_002975	CLEC11A	0.592828	2.688148e-11	4.657754e-7	1.863102e-8
26	8135069	8032037	NM_012435	SHC2	0.592687	2.724850e-11	4.721348e-7	1.815903e-8
27	8135069	8029489	NM_005581	BCAM	0.592354	2.812855e-11	4.873834e-7	1.805124e-8
28	8135069	8054804	NM_019044	CCDC93	-0.591182	3.145709e-11	5.450570e-7	1.946632e-8
29	8135069	7945245	NM_016522	NTM	0.591049	3.185833e-11	5.520092e-7	1.903480e-8
30	8135069	8016615	NM_174920	SAMD14	0.590793	3.264222e-11	5.655918e-7	1.885306e-8
31	8135069	8052798	NM_014911	AAK1	-0.589950	3.536366e-11	6.127461e-7	1.976600e-8
32	8135069	7998367	NM_058192	RPUSD1	0.589183	3.802887e-11	6.589262e-7	2.059144e-8
33	8135069	8155661	NM_199135	FOXD4L3	0.589053	3.849811e-11	6.670567e-7	2.021384e-8
34	8135069	8059014	NM_017521	FEV	0.588105	4.209920e-11	7.294528e-7	2.145450e-8
35	8135069	7917156	NM_003902	FUBP1	-0.588038	4.236721e-11	7.340967e-7	2.097419e-8
36	8135069	8066590	NM_003279	TNNC2	0.587779	4.341455e-11	7.522439e-7	2.089566e-8
37	8135069	8149652	NM_005144	HR	0.587508	4.453525e-11	7.716623e-7	2.085574e-8
38	8135069	7945688	NR_003512	INS-IGF2	0.587160	4.601436e-11	7.972908e-7	2.098134e-8
39	8135069	8035249	NM_005234	NR2F6	0.587039	4.653900e-11	8.063813e-7	2.067644e-8
40	8135069	8133339	NM_001077621	VPS37D	0.586892	4.718876e-11	8.176397e-7	2.044099e-8
41	8135069	8054092	NM_015348	TMEM131	-0.586720	4.795574e-11	8.309291e-7	2.026656e-8
42	8135069	8168316	NM_181672	OGT	-0.586068	5.097638e-11	8.832677e-7	2.103018e-8
43	8135069	8075992	NM_006941	SOX10	0.586020	5.120386e-11	8.872093e-7	2.063277e-8
44	8135069	7942693	NM_138706	B3GNT6	0.585694	5.279120e-11	9.147132e-7	2.078894e-8
45	8135069	8125234	NM_019105	TNXB	0.585513	5.368990e-11	9.302850e-7	2.067300e-8
46	8135069	7968260	NM_145657	GSX1	0.584976	5.644953e-11	9.781010e-7	2.126307e-8
47	8135069	7902269	NM_004768	SRSF11	-0.584509	5.895823e-11	1.021569e-6	2.173551e-8
48	8135069	8086810	NM_003074	SMARCC1	-0.583089	6.726708e-11	1.165537e-6	2.428202e-8
49	8135069	7926158	NM_153256	C10orf47	0.583050	6.751170e-11	1.169775e-6	2.387296e-8
50	8135069	8159808	NM_207305	FOXD4	0.582609	7.032040e-11	1.218442e-6	2.436883e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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