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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
710 7906602 NM_020335 VANGL2 link to infopage vang-like 2 (van gogh, Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 710.
Getting list of p-values for id 710.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.611 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7906602 7961320 NM_006248 PRB2 link to infopage 0.698961 1.120259e-16 1.941073e-12 1.941073e-12
2 7906602 7915466 link to infopage 0.698395 1.213942e-16 2.103398e-12 1.051699e-12
3 7906602 7905025 NM_000798 DRD5 link to infopage 0.698025 1.279346e-16 2.216723e-12 7.389076e-13
4 7906602 7897890 NM_015378 VPS13D link to infopage -0.696277 1.637200e-16 2.836777e-12 7.091941e-13
5 7906602 8053725 NM_000798 DRD5 link to infopage 0.695736 1.766250e-16 3.060381e-12 6.120762e-13
6 7906602 8012344 NM_032580 HES7 link to infopage 0.695581 1.805215e-16 3.127897e-12 5.213161e-13
7 7906602 7987701 NM_016642 SPTBN5 link to infopage 0.693944 2.269190e-16 3.931826e-12 5.616894e-13
8 7906602 7936762 NM_001001976 ATE1 link to infopage -0.691999 2.971575e-16 5.148848e-12 6.436060e-13
9 7906602 8172119 NM_004229 MED14 link to infopage -0.690787 3.511857e-16 6.084995e-12 6.761106e-13
10 7906602 8108435 NM_181838 UBE2D2 link to infopage -0.690672 3.567912e-16 6.182120e-12 6.182120e-13
11 7906602 7985159 NM_004378 CRABP1 link to infopage 0.690448 3.679261e-16 6.375055e-12 5.795505e-13
12 7906602 8155661 NM_199135 FOXD4L3 link to infopage 0.689080 4.437260e-16 7.688440e-12 6.407033e-13
13 7906602 8001046 NM_001136509 ZNF843 link to infopage 0.687583 5.440135e-16 9.426123e-12 7.250864e-13
14 7906602 8150928 NM_003580 NSMAF link to infopage -0.682966 1.012290e-15 1.753994e-11 1.252853e-12
15 7906602 8017776 NM_014877 HELZ link to infopage -0.682625 1.059308e-15 1.835463e-11 1.223642e-12
16 7906602 7992092 NM_022092 CHTF18 link to infopage 0.681522 1.226360e-15 2.124915e-11 1.328072e-12
17 7906602 8159734 NM_000718 CACNA1B link to infopage 0.678683 1.782705e-15 3.088892e-11 1.816995e-12
18 7906602 7915257 NM_022120 OXCT2 link to infopage 0.676668 2.318732e-15 4.017668e-11 2.232038e-12
19 7906602 7900352 NM_022120 OXCT2 link to infopage 0.676668 2.318732e-15 4.017668e-11 2.114562e-12
20 7906602 7916443 NM_015306 USP24 link to infopage -0.675596 2.664532e-15 4.616834e-11 2.308417e-12
21 7906602 8054804 NM_019044 CCDC93 link to infopage -0.675496 2.699379e-15 4.677214e-11 2.227245e-12
22 7906602 8000222 NM_015092 SMG1 link to infopage -0.673641 3.428867e-15 5.941198e-11 2.700544e-12
23 7906602 7993999 NM_015092 SMG1 link to infopage -0.673641 3.428867e-15 5.941198e-11 2.583129e-12
24 7906602 7931859 NM_017422 CALML5 link to infopage 0.672875 3.782777e-15 6.554417e-11 2.731007e-12
25 7906602 8066451 NM_182970 RIMS4 link to infopage 0.672526 3.955336e-15 6.853411e-11 2.741364e-12
26 7906602 8049942 NM_080741 NEU4 link to infopage 0.671471 4.525431e-15 7.841214e-11 3.015851e-12
27 7906602 8018993 NM_001082575 HRNBP3 link to infopage 0.671230 4.666338e-15 8.085364e-11 2.994579e-12
28 7906602 8154333 NM_015061 KDM4C link to infopage -0.670462 5.145164e-15 8.915025e-11 3.183937e-12
29 7906602 7920766 NM_018489 ASH1L link to infopage -0.670435 5.162463e-15 8.944999e-11 3.084483e-12
30 7906602 8110821 NM_001044 SLC6A3 link to infopage 0.669772 5.615344e-15 9.729706e-11 3.243235e-12
31 7906602 8133504 NM_032999 GTF2I link to infopage -0.669233 6.010936e-15 1.041515e-10 3.359725e-12
32 7906602 8059955 NM_022449 RAB17 link to infopage 0.668494 6.598474e-15 1.143318e-10 3.572868e-12
33 7906602 8024712 NM_033064 ATCAY link to infopage 0.668308 6.754071e-15 1.170278e-10 3.546296e-12
34 7906602 7913300 NM_016287 HP1BP3 link to infopage -0.667918 7.093595e-15 1.229107e-10 3.615021e-12
35 7906602 7939642 NM_052854 CREB3L1 link to infopage 0.667589 7.392690e-15 1.280931e-10 3.659804e-12
36 7906602 7914361 NM_001856 COL16A1 link to infopage 0.667463 7.510399e-15 1.301327e-10 3.614797e-12
37 7906602 8009353 NM_181671 PITPNC1 link to infopage -0.666642 8.324394e-15 1.442368e-10 3.898291e-12
38 7906602 8137336 NM_004769 ACCN3 link to infopage 0.665697 9.366486e-15 1.622931e-10 4.270871e-12
39 7906602 8117849 NM_033229 TRIM15 link to infopage 0.665644 9.427814e-15 1.633557e-10 4.188609e-12
40 7906602 8177760 NM_033229 TRIM15 link to infopage 0.665644 9.427814e-15 1.633557e-10 4.083893e-12
41 7906602 8179070 NM_033229 TRIM15 link to infopage 0.665644 9.427814e-15 1.633557e-10 3.984286e-12
42 7906602 8067506 BC137326 C20orf151 link to infopage 0.665199 9.964635e-15 1.726572e-10 4.110886e-12
43 7906602 8113981 NM_004199 P4HA2 link to infopage 0.664323 1.110906e-14 1.924867e-10 4.476435e-12
44 7906602 8003719 NM_001098202 HIC1 link to infopage 0.664164 1.133069e-14 1.963269e-10 4.461974e-12
45 7906602 8075934 NM_014550 CARD10 link to infopage 0.663639 1.209136e-14 2.095070e-10 4.655712e-12
46 7906602 8016077 NM_001002909 GPATCH8 link to infopage -0.663358 1.251814e-14 2.169019e-10 4.715258e-12
47 7906602 8125568 NM_080680 COL11A2 link to infopage 0.662598 1.374735e-14 2.382004e-10 5.068093e-12
48 7906602 8067409 NM_005560 LAMA5 link to infopage 0.662255 1.434062e-14 2.484798e-10 5.176663e-12
49 7906602 8043114 NM_031283 TCF7L1 link to infopage 0.662178 1.447584e-14 2.508229e-10 5.118835e-12
50 7906602 8051464 NM_019024 HEATR5B link to infopage -0.662063 1.468341e-14 2.544195e-10 5.088389e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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