[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1927	8066925	NM_000961	PTGIS		prostaglandin I2 (prostacyclin) synthase

Fetching correlation data, please wait...
Getting list of correlations for id 1927.
Getting list of p-values for id 1927.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8066925	7937560	NM_002457	MUC2	0.735283	4.221210e-19	7.314091e-15	7.314091e-15
2	8066925	7987701	NM_016642	SPTBN5	0.719086	5.665365e-18	9.816377e-14	4.908189e-14
3	8066925	7920928	NM_024897	PAQR6	0.712514	1.544097e-17	2.675456e-13	8.918188e-14
4	8066925	7970241	NM_000504	F10	0.706161	3.964149e-17	6.868681e-13	1.717170e-13
5	8066925	8165416	NM_203468	ENTPD2	0.704290	5.208199e-17	9.024246e-13	1.804849e-13
6	8066925	7898809	NM_017449	EPHB2	0.704201	5.276433e-17	9.142476e-13	1.523746e-13
7	8066925	8163548	NM_138424	KIF12	0.703219	6.082970e-17	1.053996e-12	1.505709e-13
8	8066925	8067820	BC024764	IQSEC3	0.702294	6.952383e-17	1.204639e-12	1.505799e-13
9	8066925	8023184	AY669508	SKOR2	0.700250	9.322785e-17	1.615359e-12	1.794843e-13
10	8066925	8049509	NM_015893	PRLH	0.699433	1.047478e-16	1.814965e-12	1.814965e-13
11	8066925	8026900	NM_002248	KCNN1	0.697423	1.393017e-16	2.413680e-12	2.194255e-13
12	8066925	8008723	NM_000502	EPX	0.697002	1.478297e-16	2.561445e-12	2.134537e-13
13	8066925	7899101	NM_006314	CNKSR1	0.695950	1.713974e-16	2.969803e-12	2.284464e-13
14	8066925	8153101	NM_152888	COL22A1	0.692929	2.612645e-16	4.526930e-12	3.233521e-13
15	8066925	8086985	NM_000094	COL7A1	0.691879	3.021312e-16	5.235027e-12	3.490018e-13
16	8066925	8064014	NM_022082	SLC17A9	0.690191	3.811704e-16	6.604539e-12	4.127837e-13
17	8066925	8158739	NM_006059	LAMC3	0.688512	4.794840e-16	8.308018e-12	4.887070e-13
18	8066925	7952011	NM_004588	SCN2B	0.687386	5.588167e-16	9.682618e-12	5.379232e-13
19	8066925	8166657	ENST00000410990		0.686450	6.342365e-16	1.098942e-11	5.783903e-13
20	8066925	7952893	BC024764	IQSEC3	0.686267	6.501417e-16	1.126500e-11	5.632502e-13
21	8066925	7959402	NM_030765	B3GNT4	0.684998	7.712707e-16	1.336381e-11	6.363718e-13
22	8066925	8162283	NM_004560	ROR2	0.684991	7.720632e-16	1.337754e-11	6.080699e-13
23	8066925	7920744	NM_000298	PKLR	0.684122	8.674132e-16	1.502967e-11	6.534638e-13
24	8066925	8038069	NM_018273	TMEM143	0.681937	1.160711e-15	2.011163e-11	8.379847e-13
25	8066925	8107646	NM_001136239	PRDM6	0.681740	1.191354e-15	2.064259e-11	8.257038e-13
26	8066925	7935361	NM_003061	SLIT1	0.681654	1.205131e-15	2.088130e-11	8.031268e-13
27	8066925	8179716	NM_001264	CDSN	0.681349	1.254793e-15	2.174179e-11	8.052516e-13
28	8066925	8033674	NM_024690	MUC16	0.679893	1.520624e-15	2.634786e-11	9.409950e-13
29	8066925	7998136	NM_022450	RHBDF1	0.679803	1.538893e-15	2.666440e-11	9.194620e-13
30	8066925	8037614	NM_005282	GPR4	0.679794	1.540662e-15	2.669505e-11	8.898349e-13
31	8066925	8158666	AK128680	HMCN2	0.679444	1.613235e-15	2.795253e-11	9.016944e-13
32	8066925	8064059	NM_020882	COL20A1	0.677597	2.054495e-15	3.559824e-11	1.112445e-12
33	8066925	8070853	NR_027129	C21orf67	0.677368	2.116742e-15	3.667679e-11	1.111418e-12
34	8066925	7975390	NM_001034852	SMOC1	0.677165	2.173450e-15	3.765937e-11	1.107629e-12
35	8066925	7955305	NM_001652	AQP6	0.676164	2.475707e-15	4.289657e-11	1.225616e-12
36	8066925	8042537	NM_001692	ATP6V1B1	0.674374	3.120326e-15	5.406590e-11	1.501830e-12
37	8066925	8049610	NM_198582	KLHL30	0.674167	3.204433e-15	5.552321e-11	1.500627e-12
38	8066925	7952227	NM_015645	C1QTNF5	0.673459	3.509959e-15	6.081705e-11	1.600449e-12
39	8066925	8125568	NM_080680	COL11A2	0.672585	3.925499e-15	6.801713e-11	1.744029e-12
40	8066925	8074716	NR_003267	GGT3P	0.672414	4.012418e-15	6.952317e-11	1.738079e-12
41	8066925	8010328	NM_017950	CCDC40	0.672075	4.190215e-15	7.260385e-11	1.770826e-12
42	8066925	8166661	ENST00000327781		0.672016	4.222000e-15	7.315460e-11	1.741776e-12
43	8066925	8131056	NM_017781	CYP2W1	0.671295	4.628400e-15	8.019628e-11	1.865030e-12
44	8066925	7937483	NR_002585	SNORA52	0.671057	4.770307e-15	8.265511e-11	1.878525e-12
45	8066925	8067602	NM_152864	NKAIN4	0.670647	5.025455e-15	8.707606e-11	1.935024e-12
46	8066925	7908672	NM_000299	PKP1	0.670099	5.387485e-15	9.334895e-11	2.029325e-12
47	8066925	7973709	NM_004554	NFATC4	0.669663	5.693135e-15	9.864495e-11	2.098829e-12
48	8066925	8061529	NM_014012	REM1	0.669344	5.927235e-15	1.027012e-10	2.139609e-12
49	8066925	8150197	NM_024025	DUSP26	0.669090	6.120284e-15	1.060462e-10	2.164207e-12
50	8066925	7899075	NM_004455	EXTL1	0.668844	6.313668e-15	1.093969e-10	2.187938e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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