[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6095	7935230	NM_002860	ALDH18A1		aldehyde dehydrogenase 18 family, member A1

Fetching correlation data, please wait...
Getting list of correlations for id 6095.
Getting list of p-values for id 6095.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7935230	7997099	NM_012426	SF3B3	0.772686	4.725955e-22	8.188663e-18	8.188663e-18
2	7935230	7995755	NM_018233	OGFOD1	0.747065	5.646541e-20	9.783761e-16	4.891881e-16
3	7935230	8174692	NM_145799	SEPT6	0.742557	1.234981e-19	2.139851e-15	7.132838e-16
4	7935230	8084717	NM_173216	ST6GAL1	0.739993	1.913583e-19	3.315665e-15	8.289163e-16
5	7935230	8003089	NM_003791	MBTPS1	0.733698	5.488048e-19	9.509140e-15	1.901828e-15
6	7935230	8046306	NM_015530	GORASP2	0.733040	6.116502e-19	1.059806e-14	1.766344e-15
7	7935230	7987405	NM_005739	RASGRP1	0.732008	7.244716e-19	1.255292e-14	1.793274e-15
8	7935230	8032576	NM_198969	AES	0.725665	2.017495e-18	3.495714e-14	4.369642e-15
9	7935230	8130505	NM_003379	EZR	0.719058	5.690002e-18	9.859067e-14	1.095452e-14
10	7935230	7953200	NM_001759	CCND2	0.716397	8.567839e-18	1.484549e-13	1.484549e-14
11	7935230	7996744	NM_173163	NFATC3	0.712825	1.473401e-17	2.552962e-13	2.320875e-14
12	7935230	8025697	NM_012218	ILF3	0.711747	1.732516e-17	3.001931e-13	2.501609e-14
13	7935230	7921625	NM_052931	SLAMF6	0.709759	2.331354e-17	4.039536e-13	3.107336e-14
14	7935230	7931930	NM_006257	PRKCQ	0.707180	3.413545e-17	5.914649e-13	4.224750e-14
15	7935230	8032730	NM_001961	EEF2	0.704817	4.823666e-17	8.357965e-13	5.571977e-14
16	7935230	8087271	NM_017730	QRICH1	0.701337	7.977920e-17	1.382334e-12	8.639588e-14
17	7935230	8143684	NM_004911	PDIA4	0.699793	9.950329e-17	1.724093e-12	1.014173e-13
18	7935230	7908732	NM_018085	IPO9	0.699503	1.037138e-16	1.797050e-12	9.983609e-14
19	7935230	7944179	NM_000733	CD3E	0.697318	1.413824e-16	2.449733e-12	1.289333e-13
20	7935230	8115234	NM_001155	ANXA6	0.697239	1.429675e-16	2.477198e-12	1.238599e-13
21	7935230	7963750	NM_012117	CBX5	0.696763	1.528911e-16	2.649145e-12	1.261497e-13
22	7935230	8014891	NM_012481	IKZF3	0.694821	2.007701e-16	3.478744e-12	1.581247e-13
23	7935230	7924733	NM_001618	PARP1	0.694775	2.020683e-16	3.501237e-12	1.522277e-13
24	7935230	8073194	NM_004810	GRAP2	0.692463	2.787214e-16	4.829405e-12	2.012252e-13
25	7935230	8143781	NM_024711	GIMAP6	0.690712	3.548213e-16	6.147989e-12	2.459196e-13
26	7935230	7899753	NM_005356	LCK	0.689738	4.055488e-16	7.026945e-12	2.702671e-13
27	7935230	8158317	NM_001130438	SPTAN1	0.689538	4.168261e-16	7.222346e-12	2.674943e-13
28	7935230	8015908	NM_152344	LSM12	0.687960	5.168823e-16	8.956019e-12	3.198578e-13
29	7935230	8063697	NM_198976	TH1L	0.687405	5.573227e-16	9.656731e-12	3.329907e-13
30	7935230	8150206	NM_152344	LSM12	0.686953	5.925202e-16	1.026660e-11	3.422199e-13
31	7935230	8085665	NM_015150	RFTN1	0.686750	6.090190e-16	1.055247e-11	3.404023e-13
32	7935230	7906622	NM_002348	LY9	0.684158	8.632547e-16	1.495761e-11	4.674254e-13
33	7935230	7956166	NM_015292	ESYT1	0.683846	9.000320e-16	1.559485e-11	4.725714e-13
34	7935230	7912385	NM_001001998	EXOSC10	0.682932	1.016888e-15	1.761961e-11	5.182239e-13
35	7935230	8076792	NM_022766	CERK	0.682832	1.030509e-15	1.785563e-11	5.101609e-13
36	7935230	8109507	NM_005546	ITK	0.680082	1.483322e-15	2.570152e-11	7.139311e-13
37	7935230	8163086	NM_032012	C9orf5	0.679529	1.595322e-15	2.764214e-11	7.470849e-13
38	7935230	8119993	NM_007355	HSP90AB1	0.679500	1.601475e-15	2.774876e-11	7.302306e-13
39	7935230	8099051	NM_003703	NOP14	0.678934	1.724853e-15	2.988653e-11	7.663213e-13
40	7935230	8145922	NM_015214	DDHD2	0.678725	1.772928e-15	3.071953e-11	7.679882e-13
41	7935230	7976101	NM_024824	ZC3H14	0.677589	2.056598e-15	3.563468e-11	8.691386e-13
42	7935230	8066668	NM_020967	NCOA5	0.674864	2.929223e-15	5.075465e-11	1.208444e-12
43	7935230	8162313	NM_013417	IARS	0.674855	2.932681e-15	5.081457e-11	1.181734e-12
44	7935230	8042720	NM_006429	CCT7	0.674495	3.072032e-15	5.322909e-11	1.209752e-12
45	7935230	8054614	NM_022662	ANAPC1	0.674178	3.199956e-15	5.544564e-11	1.232125e-12
46	7935230	7903393	NM_001400	S1PR1	0.673764	3.375077e-15	5.847995e-11	1.271303e-12
47	7935230	8111286	NM_013235	RNASEN	0.673565	3.462092e-15	5.998768e-11	1.276334e-12
48	7935230	8023561	NM_005570	LMAN1	0.672703	3.866894e-15	6.700167e-11	1.395868e-12
49	7935230	8135876	NM_014390	SND1	0.671888	4.291174e-15	7.435318e-11	1.517412e-12
50	7935230	8094743	NM_004310	RHOH	0.671519	4.497973e-15	7.793637e-11	1.558727e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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