[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6502	8156415	NM_006648	WNK2		WNK lysine deficient protein kinase 2

Fetching correlation data, please wait...
Getting list of correlations for id 6502.
Getting list of p-values for id 6502.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8156415	7995310	ENST00000319817		0.840817	3.264759e-29	5.656847e-25	5.656847e-25
2	8156415	8151609	NM_172239	REXO1L1	0.837103	9.690655e-29	1.679100e-24	8.395499e-25
3	8156415	7935983	NM_005029	PITX3	0.836696	1.089806e-28	1.888307e-24	6.294355e-25
4	8156415	7937560	NM_002457	MUC2	0.829835	7.545302e-28	1.307375e-23	3.268436e-24
5	8156415	7955184	NM_006262	PRPH	0.826919	1.673107e-27	2.898993e-23	5.797986e-24
6	8156415	8064242	NR_027686	NCRNA00176	0.826119	2.076316e-27	3.597633e-23	5.996055e-24
7	8156415	8038299	NM_033142	CGB7	0.822083	6.068600e-27	1.051506e-22	1.502152e-23
8	8156415	7931519	NM_152643	KNDC1	0.821650	6.796842e-27	1.177689e-22	1.472111e-23
9	8156415	7959761	NM_181709	FAM101A	0.821000	8.054686e-27	1.395636e-22	1.550706e-23
10	8156415	8004842	NM_173728	ARHGEF15	0.819533	1.178528e-26	2.042036e-22	2.042036e-23
11	8156415	8121209	NM_005604	POU3F2	0.818807	1.420779e-26	2.461783e-22	2.237985e-23
12	8156415	7927367	NM_001040084	ANXA8	0.818689	1.464829e-26	2.538110e-22	2.115092e-23
13	8156415	8014269	NM_139285	GAS2L2	0.818432	1.564569e-26	2.710929e-22	2.085330e-23
14	8156415	7927307	NM_001630	ANXA8L2	0.817728	1.873607e-26	3.246399e-22	2.318856e-23
15	8156415	7997801	NM_013278	IL17C	0.817508	1.981685e-26	3.433666e-22	2.289111e-23
16	8156415	8112072	NM_021147	CCNO	0.816260	2.721276e-26	4.715154e-22	2.946971e-23
17	8156415	7913450	NM_005529	HSPG2	0.815127	3.621370e-26	6.274748e-22	3.691028e-23
18	8156415	7992845	NM_003456	ZNF205	0.814871	3.861775e-26	6.691298e-22	3.717388e-23
19	8156415	7973336	NM_004995	MMP14	0.814451	4.290988e-26	7.434995e-22	3.913155e-23
20	8156415	8153876	NM_025251	ARHGAP39	0.814358	4.392096e-26	7.610185e-22	3.805093e-23
21	8156415	7903632	NM_001408	CELSR2	0.813234	5.812246e-26	1.007088e-21	4.795657e-23
22	8156415	8132070	NM_002047	GARS	-0.812038	7.816468e-26	1.354359e-21	6.156179e-23
23	8156415	8125234	NM_019105	TNXB	0.810943	1.023244e-25	1.772975e-21	7.708587e-23
24	8156415	8074131	NM_001080420	SHANK3	0.810883	1.038458e-25	1.799336e-21	7.497231e-23
25	8156415	8099926	NM_001100399	PDS5A	-0.810577	1.119273e-25	1.939364e-21	7.757456e-23
26	8156415	8074063	NM_024866	ADM2	0.810236	1.216391e-25	2.107641e-21	8.106312e-23
27	8156415	8030181	NM_033378	CGB2	0.810008	1.286063e-25	2.228362e-21	8.253192e-23
28	8156415	8153828	NM_003923	FOXH1	0.809790	1.356020e-25	2.349576e-21	8.391341e-23
29	8156415	8006562	NM_033315	RASL10B	0.808863	1.698420e-25	2.942852e-21	1.014777e-22
30	8156415	8008228	NM_138281	DLX4	0.808586	1.816273e-25	3.147057e-21	1.049019e-22
31	8156415	7998015	NM_032451	SPIRE2	0.808405	1.897298e-25	3.287448e-21	1.060467e-22
32	8156415	8107406	ENST00000410774		0.807801	2.194972e-25	3.803229e-21	1.188509e-22
33	8156415	7977978	NM_005864	EFS	0.807772	2.210560e-25	3.830237e-21	1.160678e-22
34	8156415	8034469	NM_032301	FBXW9	0.806873	2.742264e-25	4.751522e-21	1.397506e-22
35	8156415	8032312	NM_138813	ATP8B3	0.805717	3.613787e-25	6.261608e-21	1.789031e-22
36	8156415	8143941	NM_198285	WDR86	0.805430	3.868329e-25	6.702654e-21	1.861848e-22
37	8156415	8060134	NM_004321	KIF1A	0.805244	4.042928e-25	7.005181e-21	1.893292e-22
38	8156415	7947991	NM_015231	NUP160	-0.805056	4.226818e-25	7.323807e-21	1.927318e-22
39	8156415	8133704	NM_001110199	SRRM3	0.804698	4.601013e-25	7.972175e-21	2.044148e-22
40	8156415	8000467	NM_001109763	GSG1L	0.804695	4.604528e-25	7.978266e-21	1.994566e-22
41	8156415	7900792	NM_002840	PTPRF	0.803882	5.576478e-25	9.662364e-21	2.356674e-22
42	8156415	8019576	NM_033184	KRTAP2-4	0.803877	5.583679e-25	9.674841e-21	2.303534e-22
43	8156415	8015210	NM_033184	KRTAP2-4	0.803877	5.583679e-25	9.674841e-21	2.249963e-22
44	8156415	8023561	NM_005570	LMAN1	-0.803414	6.225430e-25	1.078680e-20	2.451546e-22
45	8156415	8005328	NM_016239	MYO15A	0.803289	6.410977e-25	1.110830e-20	2.468511e-22
46	8156415	8165934	NM_001649	SHROOM2	0.802778	7.225084e-25	1.251890e-20	2.721501e-22
47	8156415	8028389	NM_001042522	SPRED3	0.802776	7.228968e-25	1.252563e-20	2.665028e-22
48	8156415	7997942	NM_014427	CPNE7	0.802700	7.358522e-25	1.275011e-20	2.656273e-22
49	8156415	8075200	NM_012265	RHBDD3	0.801555	9.607633e-25	1.664715e-20	3.397377e-22
50	8156415	8060126	NM_198998	AQP12A	0.801332	1.011633e-24	1.752856e-20	3.505713e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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