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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id Label1 AccNum GeneSym Info Gene Name
7238 8105958 NM_000344 SMN1 link to infopage survival of motor neuron 1, telomeric
7239 8177647 NM_000344 SMN1 link to infopage survival of motor neuron 1, telomeric
8677 8106006 NM_000344 SMN1 link to infopage survival of motor neuron 1, telomeric

Fetching correlation data, please wait...
Getting list of correlations for id 7238.
Getting list of p-values for id 7238.
1 of 3 done.
Getting list of correlations for id 7239.
Getting list of p-values for id 7239.
2 of 3 done.
Getting list of correlations for id 8677.
Getting list of p-values for id 8677.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.282 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8177647 8105958 NM_000344 SMN1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 8105958 8177647 NM_000344 SMN1 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
3 8105958 8106006 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 1.416363e-77 4.721210e-78
4 8106006 8105958 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 1.416363e-77 3.540907e-78
5 8106006 8177647 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 1.416363e-77 2.832726e-78
6 8177647 8106006 NM_000344 SMN1 link to infopage 0.986211 2.724770e-82 1.416363e-77 2.360605e-78
7 8106006 8105937 AK289851 SMA5 link to infopage 0.825136 2.702634e-27 1.404856e-22 2.006938e-23
8 8106006 8112491 AK289851 SMA5 link to infopage 0.819391 1.222394e-26 6.354125e-22 7.942657e-23
9 8106006 8074925 NR_024448 LOC91316 link to infopage 0.795398 3.914165e-24 2.034622e-19 2.260691e-20
10 8106006 8105995 AK289851 SMA5 link to infopage 0.790777 1.088948e-23 5.660459e-19 5.660459e-20
11 8106006 8124469 BC171739 GUSBL1 link to infopage 0.789606 1.405338e-23 7.305086e-19 6.640987e-20
12 8106006 8111455 NR_003504 GUSBL1 link to infopage 0.789358 1.483196e-23 7.709803e-19 6.424836e-20
13 8105958 8105937 AK289851 SMA5 link to infopage 0.787396 2.264958e-23 1.177348e-18 9.056522e-20
14 8177647 8105937 AK289851 SMA5 link to infopage 0.787396 2.264958e-23 1.177348e-18 8.409628e-20
15 8106006 7981217 NM_018036 ATG2B link to infopage 0.786764 2.593589e-23 1.348174e-18 8.987825e-20
16 8106006 8112558 NR_003504 GUSBL1 link to infopage 0.783792 4.873456e-23 2.533271e-18 1.583294e-19
17 8105958 8112491 AK289851 SMA5 link to infopage 0.781079 8.593327e-23 4.466897e-18 2.627587e-19
18 8177647 8112491 AK289851 SMA5 link to infopage 0.781079 8.593327e-23 4.466897e-18 2.481610e-19
19 8106006 7916185 NM_001009881 ZCCHC11 link to infopage 0.756651 1.010798e-20 5.254231e-16 2.765385e-17
20 8177647 8074925 NR_024448 LOC91316 link to infopage 0.755084 1.346364e-20 6.998533e-16 3.499266e-17
21 8105958 8074925 NR_024448 LOC91316 link to infopage 0.755084 1.346364e-20 6.998533e-16 3.332635e-17
22 8105958 8124469 BC171739 GUSBL1 link to infopage 0.751860 2.411554e-20 1.253550e-15 5.697955e-17
23 8177647 8124469 BC171739 GUSBL1 link to infopage 0.751860 2.411554e-20 1.253550e-15 5.450218e-17
24 8105958 8105995 AK289851 SMA5 link to infopage 0.751665 2.497396e-20 1.298171e-15 5.409047e-17
25 8177647 8105995 AK289851 SMA5 link to infopage 0.751665 2.497396e-20 1.298171e-15 5.192685e-17
26 8177647 7981217 NM_018036 ATG2B link to infopage 0.751127 2.750161e-20 1.429561e-15 5.498313e-17
27 8105958 7981217 NM_018036 ATG2B link to infopage 0.751127 2.750161e-20 1.429561e-15 5.294672e-17
28 8106006 8009382 NM_004459 BPTF link to infopage 0.749566 3.631976e-20 1.887938e-15 6.742634e-17
29 8177647 8111455 NR_003504 GUSBL1 link to infopage 0.748523 4.368046e-20 2.270554e-15 7.829496e-17
30 8105958 8111455 NR_003504 GUSBL1 link to infopage 0.748523 4.368046e-20 2.270554e-15 7.568513e-17
31 8106006 7920766 NM_018489 ASH1L link to infopage 0.745689 7.182301e-20 3.733432e-15 1.204333e-16
32 8106006 8175420 NM_002139 RBMX link to infopage 0.744487 8.850722e-20 4.600694e-15 1.437717e-16
33 8105958 8112558 NR_003504 GUSBL1 link to infopage 0.743295 1.087673e-19 5.653834e-15 1.713283e-16
34 8177647 8112558 NR_003504 GUSBL1 link to infopage 0.743295 1.087673e-19 5.653834e-15 1.662892e-16
35 8106006 8014551 NM_007247 SYNRG link to infopage 0.740103 1.878171e-19 9.762919e-15 2.789405e-16
36 8106006 8136401 NM_015135 NUP205 link to infopage 0.739723 2.003228e-19 1.041298e-14 2.892494e-16
37 8106006 8067011 NM_015339 ADNP link to infopage 0.738306 2.545063e-19 1.322949e-14 3.575538e-16
38 8106006 8100714 NM_001031732 YTHDC1 link to infopage 0.737892 2.728736e-19 1.418424e-14 3.732695e-16
39 8106006 8097867 NM_015196 KIAA0922 link to infopage 0.737121 3.105794e-19 1.614423e-14 4.139545e-16
40 8106006 8041149 NM_015131 WDR43 link to infopage 0.734613 4.717032e-19 2.451960e-14 6.129901e-16
41 8106006 8132070 NM_002047 GARS link to infopage 0.734127 5.112454e-19 2.657505e-14 6.481719e-16
42 8106006 8157534 NM_007018 CEP110 link to infopage 0.734124 5.114583e-19 2.658611e-14 6.330027e-16
43 8106006 8150928 NM_003580 NSMAF link to infopage 0.731210 8.254831e-19 4.290944e-14 9.978939e-16
44 8106006 8100902 NM_032217 ANKRD17 link to infopage 0.731202 8.264862e-19 4.296158e-14 9.763995e-16
45 8106006 8047641 NM_177538 CYP20A1 link to infopage 0.730431 9.371845e-19 4.871579e-14 1.082573e-15
46 8106006 7915130 NM_006802 SF3A3 link to infopage 0.729865 1.027348e-18 5.340259e-14 1.160926e-15
47 8106006 8141648 NM_015831 ACHE link to infopage -0.729863 1.027720e-18 5.342189e-14 1.136636e-15
48 8106006 8088776 NM_032682 FOXP1 link to infopage 0.729538 1.083283e-18 5.631014e-14 1.173128e-15
49 8106006 7975725 NM_019589 YLPM1 link to infopage 0.728955 1.190291e-18 6.187250e-14 1.262704e-15
50 8106006 8104998 NM_018034 WDR70 link to infopage 0.728936 1.194086e-18 6.206978e-14 1.241396e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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