[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4641	8094372	NM_003102	SOD3		superoxide dismutase 3, extracellular

Fetching correlation data, please wait...
Getting list of correlations for id 4641.
Getting list of p-values for id 4641.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.150 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8094372	8038299	NM_033142	CGB7	0.783092	5.646242e-23	9.783244e-19	9.783244e-19
2	8094372	7929840	NM_003987	PAX2	0.771897	5.526914e-22	9.576485e-18	4.788242e-18
3	8094372	8030181	NM_033378	CGB2	0.766210	1.676765e-21	2.905330e-17	9.684435e-18
4	8094372	8038288	NM_033377	CGB1	0.763296	2.925411e-21	5.068860e-17	1.267215e-17
5	8094372	8038292	NM_033043	CGB5	0.763091	3.041617e-21	5.270210e-17	1.054042e-17
6	8094372	8024605	NM_021938	CELF5	0.759348	6.140964e-21	1.064045e-16	1.773408e-17
7	8094372	8153876	NM_025251	ARHGAP39	0.756539	1.031850e-20	1.787886e-16	2.554123e-17
8	8094372	8030187	NM_033043	CGB5	0.756282	1.081489e-20	1.873896e-16	2.342370e-17
9	8094372	8074131	NM_001080420	SHANK3	0.755401	1.270606e-20	2.201579e-16	2.446199e-17
10	8094372	7995193	NM_024742	ARMC5	0.755053	1.353969e-20	2.346021e-16	2.346021e-17
11	8094372	7940022	NM_178570	RTN4RL2	0.754562	1.480475e-20	2.565219e-16	2.332017e-17
12	8094372	7918416	NM_006492	ALX3	0.753086	1.934270e-20	3.351509e-16	2.792924e-17
13	8094372	8137537	NM_001427	EN2	0.752448	2.169640e-20	3.759334e-16	2.891796e-17
14	8094372	7998577	NM_002513	NME3	0.748747	4.198736e-20	7.275151e-16	5.196536e-17
15	8094372	7937667	NM_003957	BRSK2	0.747119	5.592746e-20	9.690551e-16	6.460367e-17
16	8094372	8018379	NM_020753	CASKIN2	0.746263	6.497475e-20	1.125817e-15	7.036359e-17
17	8094372	8121209	NM_005604	POU3F2	0.745880	6.947465e-20	1.203787e-15	7.081102e-17
18	8094372	8002729	NR_027264	GLG1	-0.745748	7.109395e-20	1.231845e-15	6.843583e-17
19	8094372	8159142	NM_000093	COL5A1	0.744104	9.458332e-20	1.638845e-15	8.625501e-17
20	8094372	8098740	NM_033178	DUX4	0.743210	1.103610e-19	1.912225e-15	9.561126e-17
21	8094372	8071444	NM_144704	AIFM3	0.742670	1.211117e-19	2.098503e-15	9.992869e-17
22	8094372	8141648	NM_015831	ACHE	0.741004	1.610953e-19	2.791298e-15	1.268772e-16
23	8094372	7942693	NM_138706	B3GNT6	0.740932	1.630908e-19	2.825874e-15	1.228641e-16
24	8094372	8013606	NM_000638	VTN	0.740016	1.906116e-19	3.302728e-15	1.376137e-16
25	8094372	8168045	NM_004429	EFNB1	0.739289	2.156069e-19	3.735821e-15	1.494328e-16
26	8094372	8050875	NM_018263	ASXL2	-0.738552	2.441903e-19	4.231085e-15	1.627341e-16
27	8094372	7939341	NM_000610	CD44	-0.738179	2.600244e-19	4.505443e-15	1.668682e-16
28	8094372	8067652	NM_001958	EEF1A2	0.738004	2.678156e-19	4.640441e-15	1.657300e-16
29	8094372	8172119	NM_004229	MED14	-0.736200	3.623026e-19	6.277618e-15	2.164696e-16
30	8094372	7896985	NM_080875	MIB2	0.735577	4.019522e-19	6.964625e-15	2.321542e-16
31	8094372	8155942	NM_001013735	FOXB2	0.735400	4.139765e-19	7.172971e-15	2.313862e-16
32	8094372	8038280	NM_000737	CGB	0.734538	4.775901e-19	8.275204e-15	2.586001e-16
33	8094372	8151609	NM_172239	REXO1L1	0.733962	5.253793e-19	9.103247e-15	2.758560e-16
34	8094372	8131087	NM_001080461	UNCX	0.733253	5.905075e-19	1.023172e-14	3.009330e-16
35	8094372	8030015	NM_012451	SYNGR4	0.732909	6.249140e-19	1.082788e-14	3.093681e-16
36	8094372	8049799	NM_001001891	ANO7	0.732760	6.404234e-19	1.109662e-14	3.082394e-16
37	8094372	7955869	NM_022658	HOXC8	0.732060	7.183144e-19	1.244623e-14	3.363847e-16
38	8094372	8033023	NM_001134316	PRR22	0.731974	7.284818e-19	1.262240e-14	3.321685e-16
39	8094372	8008201	NM_002507	NGFR	0.731688	7.634393e-19	1.322811e-14	3.391824e-16
40	8094372	8007112	NM_001146041	KRTAP4-9	0.731449	7.938607e-19	1.375522e-14	3.438806e-16
41	8094372	7991828	ENST00000431654		0.731204	8.262253e-19	1.431601e-14	3.491709e-16
42	8094372	7937433	NM_000797	DRD4	0.731197	8.271282e-19	1.433165e-14	3.412298e-16
43	8094372	7996219	NM_020465	NDRG4	0.730478	9.299018e-19	1.611241e-14	3.747072e-16
44	8094372	7912004	NM_207370	GPR153	0.730333	9.521733e-19	1.649831e-14	3.749615e-16
45	8094372	7909064	NM_005076	CNTN2	0.730288	9.590784e-19	1.661795e-14	3.692878e-16
46	8094372	8016320	NM_203400	RPRML	0.729705	1.054269e-18	1.826732e-14	3.971157e-16
47	8094372	8067798	NM_018419	SOX18	0.729041	1.173879e-18	2.033980e-14	4.327617e-16
48	8094372	7955112	NM_181788	H1FNT	0.728653	1.249931e-18	2.165755e-14	4.511989e-16
49	8094372	7985920	NM_001039958	MESP2	0.728197	1.345120e-18	2.330690e-14	4.756511e-16
50	8094372	8033571	NM_198471	KANK3	0.727423	1.523443e-18	2.639670e-14	5.279339e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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