[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2692	7960143	NM_003428	ZNF84		zinc finger protein 84

Fetching correlation data, please wait...
Getting list of correlations for id 2692.
Getting list of p-values for id 2692.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7960143	8175102	NM_182314	ENOX2	0.562462	4.259423e-10	7.380302e-6	7.380302e-6
2	7960143	8069561	NM_152265	BTF3L4	0.545036	1.840349e-9	3.188773e-5	1.594387e-5
3	7960143	8127841	NM_015599	PGM3	0.543606	2.067575e-9	3.582488e-5	1.194163e-5
4	7960143	8154635	NM_002451	MTAP	0.524324	9.431240e-9	1.634151e-4	4.085377e-5
5	7960143	8160016	NM_012416	RANBP6	0.520150	1.293922e-8	2.241978e-4	4.483956e-5
6	7960143	7975292	NM_002877	RAD51L1	0.519965	1.312011e-8	2.273321e-4	3.788868e-5
7	7960143	8034827	NM_005716	GIPC1	-0.517328	1.598491e-8	2.769706e-4	3.956723e-5
8	7960143	8059770	NM_145702	TIGD1	0.517302	1.601581e-8	2.775060e-4	3.468825e-5
9	7960143	8089993	NM_019069	WDR5B	0.514604	1.956738e-8	3.390439e-4	3.767155e-5
10	7960143	7922462	NM_022100	MRPS14	0.510197	2.704066e-8	4.685334e-4	4.685334e-5
11	7960143	8008530	NM_016001	UTP18	0.509584	2.827415e-8	4.899062e-4	4.453693e-5
12	7960143	8004081	NM_153018	ZFP3	0.506949	3.421900e-8	5.929126e-4	4.940938e-5
13	7960143	7962203	NM_001040436	YARS2	0.505652	3.756711e-8	6.509254e-4	5.007118e-5
14	7960143	8128767	NM_014797	ZBTB24	0.502662	4.651667e-8	8.059943e-4	5.757102e-5
15	7960143	8029399	NM_001146220	ZNF226	0.499795	5.698959e-8	9.874587e-4	6.583058e-5
16	7960143	7918900	ENST00000391083		0.499086	5.990670e-8	1.038003e-3	6.487521e-5
17	7960143	8036333	NM_020951	ZNF529	0.496897	6.984039e-8	1.210124e-3	7.118379e-5
18	7960143	8170630	NM_032882	PNMA6A	-0.495675	7.604496e-8	1.317631e-3	7.320172e-5
19	7960143	7917088	NM_005482	PIGK	0.494195	8.427449e-8	1.460224e-3	7.685390e-5
20	7960143	8014047	NM_024683	C17orf42	0.493424	8.888604e-8	1.540128e-3	7.700642e-5
21	7960143	8025998	NM_003437	ZNF136	0.492398	9.540388e-8	1.653063e-3	7.871729e-5
22	7960143	7934050	NM_152707	SLC25A16	0.487301	1.351229e-7	2.341275e-3	1.064216e-4
23	7960143	7968898	BC039586	KIAA1704	0.487023	1.376865e-7	2.385695e-3	1.037259e-4
24	7960143	8016825	NM_004375	COX11	0.486068	1.468656e-7	2.544741e-3	1.060309e-4
25	7960143	7921076	NM_182679	GPATCH4	0.485750	1.500510e-7	2.599934e-3	1.039973e-4
26	7960143	8104422	NM_002454	MTRR	0.485555	1.520278e-7	2.634186e-3	1.013148e-4
27	7960143	8025633	NM_001111307	PDE4A	-0.485049	1.573017e-7	2.725567e-3	1.009469e-4
28	7960143	8046848	NM_018471	ZC3H15	0.484981	1.580187e-7	2.737990e-3	9.778536e-5
29	7960143	8098985	NM_024511	HAUS3	0.484741	1.605887e-7	2.782521e-3	9.594900e-5
30	7960143	8077116	NM_001014440	ODF3B	-0.484350	1.648584e-7	2.856501e-3	9.521672e-5
31	7960143	8081277	NM_020202	NIT2	0.484047	1.682439e-7	2.915162e-3	9.403749e-5
32	7960143	8047038	NM_000534	PMS1	0.483808	1.709641e-7	2.962295e-3	9.257173e-5
33	7960143	7965956	NM_006166	NFYB	0.482927	1.813362e-7	3.142012e-3	9.521250e-5
34	7960143	8020323	NM_003799	RNMT	0.481916	1.939856e-7	3.361188e-3	9.885846e-5
35	7960143	7926821	NM_032844	MASTL	0.481316	2.018884e-7	3.498121e-3	9.994631e-5
36	7960143	8147262	NM_016023	OTUD6B	0.480639	2.111672e-7	3.658894e-3	1.016359e-4
37	7960143	8052994	NM_015470	RAB11FIP5	-0.480185	2.176073e-7	3.770481e-3	1.019049e-4
38	7960143	8105612	NM_005869	CWC27	0.479735	2.241942e-7	3.884613e-3	1.022266e-4
39	7960143	8114030	NM_007054	KIF3A	0.479401	2.291991e-7	3.971333e-3	1.018291e-4
40	7960143	8084035	NM_016331	ZNF639	0.478049	2.505544e-7	4.341357e-3	1.085339e-4
41	7960143	8098150	NM_018352	C4orf43	0.476420	2.788068e-7	4.830886e-3	1.178265e-4
42	7960143	8046997	NM_019048	ASNSD1	0.475340	2.991894e-7	5.184055e-3	1.234299e-4
43	7960143	8116534	NM_032765	TRIM52	0.473998	3.264782e-7	5.656887e-3	1.315555e-4
44	7960143	8049478	NM_198189	COPS8	0.473795	3.308029e-7	5.731822e-3	1.302687e-4
45	7960143	7909478	NM_014388	C1orf107	0.471489	3.839895e-7	6.653387e-3	1.478530e-4
46	7960143	8095187	NM_025009	CEP135	0.471252	3.898917e-7	6.755654e-3	1.468620e-4
47	7960143	8038993	NM_006969	ZNF28	0.470532	4.083562e-7	7.075588e-3	1.505444e-4
48	7960143	8147970	NM_198120	EBAG9	0.470119	4.193385e-7	7.265879e-3	1.513725e-4
49	7960143	8123463	NM_018288	PHF10	0.469359	4.402438e-7	7.628105e-3	1.556756e-4
50	7960143	8086141	NM_014805	EPM2AIP1	0.467093	5.086710e-7	8.813743e-3	1.762749e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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