[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2517	7965956	NM_006166	NFYB		nuclear transcription factor Y, beta

Fetching correlation data, please wait...
Getting list of correlations for id 2517.
Getting list of p-values for id 2517.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7965956	7951144	NM_024725	CCDC82	0.754530	1.489030e-20	2.580043e-16	2.580043e-16
2	7965956	8090256	NM_003794	SNX4	0.747141	5.571979e-20	9.654568e-16	4.827284e-16
3	7965956	8022473	NM_052911	ESCO1	0.746392	6.352447e-20	1.100689e-15	3.668962e-16
4	7965956	8121118	NM_012115	CASP8AP2	0.743663	1.020666e-19	1.768509e-15	4.421272e-16
5	7965956	7917088	NM_005482	PIGK	0.736359	3.528343e-19	6.113560e-15	1.222712e-15
6	7965956	7902448	NM_001035006	RPL17	0.730631	9.070710e-19	1.571682e-14	2.619470e-15
7	7965956	7962013	NM_016570	ERGIC2	0.729389	1.109753e-18	1.922869e-14	2.746956e-15
8	7965956	8151561	NM_024699	ZFAND1	0.727973	1.394481e-18	2.416217e-14	3.020271e-15
9	7965956	7989013	NM_016304	RSL24D1	0.718832	5.892690e-18	1.021026e-13	1.134474e-14
10	7965956	7943297	NM_014679	CEP57	0.718202	6.494971e-18	1.125384e-13	1.125384e-14
11	7965956	7917771	NM_014597	DNTTIP2	0.718030	6.669051e-18	1.155546e-13	1.050497e-14
12	7965956	7903582	NM_001035006	RPL17	0.716096	8.971868e-18	1.554556e-13	1.295463e-14
13	7965956	7923119	NM_194314	ZBTB41	0.715850	9.314452e-18	1.613915e-13	1.241473e-14
14	7965956	7935002	NM_003133	SRP9	0.715384	1.000101e-17	1.732875e-13	1.237768e-14
15	7965956	7901867	NM_003368	USP1	0.713867	1.259034e-17	2.181529e-13	1.454352e-14
16	7965956	8081069	NM_018293	ZNF654	0.711011	1.934439e-17	3.351802e-13	2.094876e-14
17	7965956	7988605	NM_004236	COPS2	0.710246	2.168430e-17	3.757238e-13	2.210140e-14
18	7965956	7962427	NM_031292	PUS7L	0.710229	2.173949e-17	3.766801e-13	2.092667e-14
19	7965956	8078270	NM_002948	RPL15	0.706474	3.786305e-17	6.560531e-13	3.452911e-14
20	7965956	8038993	NM_006969	ZNF28	0.706222	3.929142e-17	6.808024e-13	3.404012e-14
21	7965956	8046848	NM_018471	ZC3H15	0.705619	4.291115e-17	7.435215e-13	3.540579e-14
22	7965956	7989885	NM_001031723	DNAJB14	0.705468	4.387324e-17	7.601917e-13	3.455417e-14
23	7965956	8150870	NM_002806	PSMC6	0.705004	4.694326e-17	8.133859e-13	3.536461e-14
24	7965956	8027674	NM_018443	ZNF302	0.701363	7.948357e-17	1.377212e-12	5.738383e-14
25	7965956	8109222	NM_000971	RPL7	0.701080	8.277603e-17	1.434260e-12	5.737041e-14
26	7965956	8135688	NM_016200	NAA38	0.699577	1.026263e-16	1.778206e-12	6.839252e-14
27	7965956	7927267	NM_019054	FAM35A	0.699417	1.049806e-16	1.818998e-12	6.737030e-14
28	7965956	7988031	NM_001006	RPS3A	0.697301	1.417217e-16	2.455613e-12	8.770045e-14
29	7965956	7954382	NM_024854	PYROXD1	0.695135	1.921518e-16	3.329414e-12	1.148074e-13
30	7965956	8046997	NM_019048	ASNSD1	0.694160	2.201909e-16	3.815247e-12	1.271749e-13
31	7965956	7947221	NM_018362	LIN7C	0.690960	3.429229e-16	5.941825e-12	1.916718e-13
32	7965956	8147864	NM_014673	TTC35	0.690450	3.678547e-16	6.373819e-12	1.991818e-13
33	7965956	8085660	NM_206831	DPH3	0.685420	7.287518e-16	1.262708e-11	3.826389e-13
34	7965956	7921987	NM_019026	TMCO1	0.683726	9.146642e-16	1.584839e-11	4.661290e-13
35	7965956	7903407	NM_020978	AMY2B	0.683529	9.390482e-16	1.627089e-11	4.648825e-13
36	7965956	8018038	NM_018672	ABCA5	0.682413	1.089501e-15	1.887779e-11	5.243830e-13
37	7965956	7923007	NM_015984	UCHL5	0.682213	1.118952e-15	1.938808e-11	5.240022e-13
38	7965956	8097782	NM_001006	RPS3A	0.682083	1.138435e-15	1.972566e-11	5.190963e-13
39	7965956	8131479	NM_019005	MIOS	0.680445	1.414042e-15	2.450110e-11	6.282334e-13
40	7965956	8141222	NM_001006	RPS3A	0.680061	1.487363e-15	2.577154e-11	6.442884e-13
41	7965956	7946635	NM_021211	ZBED5	0.680051	1.489292e-15	2.580496e-11	6.293892e-13
42	7965956	7917906	NM_000971	RPL7	0.679668	1.566487e-15	2.714252e-11	6.462505e-13
43	7965956	8171747	NM_001412	EIF1AX	0.679521	1.597060e-15	2.767226e-11	6.435410e-13
44	7965956	7910099	NM_001130440	SRP9	0.677572	2.061127e-15	3.571314e-11	8.116624e-13
45	7965956	8099887	NM_001024921	RPL9	0.676817	2.274207e-15	3.940518e-11	8.756706e-13
46	7965956	8171834	NM_000661	RPL9	0.676441	2.388244e-15	4.138110e-11	8.995892e-13
47	7965956	8053648	NM_016618	KRCC1	0.676408	2.398533e-15	4.155938e-11	8.842422e-13
48	7965956	8141050	NM_001006	RPS3A	0.676121	2.489418e-15	4.313415e-11	8.986281e-13
49	7965956	7990898	NM_000661	RPL9	0.675820	2.588589e-15	4.485248e-11	9.153568e-13
50	7965956	8014066	NM_001003927	EVI2A	0.675731	2.618454e-15	4.536995e-11	9.073991e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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