[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2055	7913896	NM_001004434	SLC30A2		solute carrier family 30 (zinc transporter), member 2

Fetching correlation data, please wait...
Getting list of correlations for id 2055.
Getting list of p-values for id 2055.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.149 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7913896	8034747	ENST00000343945		0.727749	1.445773e-18	2.505091e-14	2.505091e-14
2	7913896	8024655	NM_001135580	C19orf71	0.698990	1.115549e-16	1.932911e-12	9.664555e-13
3	7913896	8035408	NM_000923	PDE4C	0.697881	1.305571e-16	2.262162e-12	7.540542e-13
4	7913896	8170753	NM_014370	SRPK3	0.686871	5.991429e-16	1.038135e-11	2.595337e-12
5	7913896	7940377	NM_017870	TMEM132A	0.684155	8.635748e-16	1.496316e-11	2.992632e-12
6	7913896	8137280	NM_000603	NOS3	0.683492	9.436187e-16	1.635008e-11	2.725014e-12
7	7913896	8032770	NM_016539	SIRT6	0.683021	1.004854e-15	1.741111e-11	2.487301e-12
8	7913896	8067506	BC137326	C20orf151	0.679222	1.660935e-15	2.877902e-11	3.597378e-12
9	7913896	8007259	ENST00000225928		0.678940	1.723516e-15	2.986336e-11	3.318151e-12
10	7913896	8038319	NM_002152	HRC	0.678887	1.735510e-15	3.007118e-11	3.007118e-12
11	7913896	8028325	NM_033520	C19orf33	0.678859	1.742055e-15	3.018459e-11	2.744053e-12
12	7913896	8070933	NM_006657	FTCD	0.676600	2.339456e-15	4.053575e-11	3.377979e-12
13	7913896	8030721	NM_002975	CLEC11A	0.675034	2.865364e-15	4.964815e-11	3.819089e-12
14	7913896	7934367	NM_004034	ANXA7	-0.673362	3.553721e-15	6.157533e-11	4.398238e-12
15	7913896	7948213	NM_006093	PRG3	0.672674	3.881376e-15	6.725260e-11	4.483507e-12
16	7913896	7996448	NM_003946	NOL3	0.670561	5.080701e-15	8.803331e-11	5.502082e-12
17	7913896	8032699	NM_015174	ZFR2	0.670550	5.087853e-15	8.815723e-11	5.185720e-12
18	7913896	8025126	NM_144614	MBD3L2	0.670453	5.150784e-15	8.924763e-11	4.958202e-12
19	7913896	7977418	NM_001134875	C14orf80	0.669417	5.873208e-15	1.017651e-10	5.356057e-12
20	7913896	7935528	NM_003015	SFRP5	0.668663	6.458904e-15	1.119134e-10	5.595671e-12
21	7913896	7939365	NM_014344	FJX1	0.667498	7.477499e-15	1.295626e-10	6.169649e-12
22	7913896	8039759	NM_198458	ZNF497	0.666627	8.339209e-15	1.444935e-10	6.567885e-12
23	7913896	8061944	BC137111	C20orf134	0.665761	9.291142e-15	1.609876e-10	6.999462e-12
24	7913896	8030292	NM_014419	DKKL1	0.663980	1.159208e-14	2.008560e-10	8.369002e-12
25	7913896	8136080	NM_005631	SMO	0.662378	1.412513e-14	2.447461e-10	9.789844e-12
26	7913896	8087874	NM_025222	WDR82	-0.662233	1.437873e-14	2.491403e-10	9.582320e-12
27	7913896	8132832	AK057400	LOC100129427	0.661583	1.557356e-14	2.698430e-10	9.994185e-12
28	7913896	8134827	NM_173564	C7orf51	0.659835	1.928349e-14	3.341251e-10	1.193304e-11
29	7913896	8098512	NM_021942	C4orf41	-0.659144	2.097452e-14	3.634255e-10	1.253191e-11
30	7913896	7945688	NR_003512	INS-IGF2	0.658136	2.370163e-14	4.106782e-10	1.368927e-11
31	7913896	8116195	NM_173465	COL23A1	0.657659	2.510931e-14	4.350691e-10	1.403449e-11
32	7913896	8075118	NM_001887	CRYBB1	0.656776	2.793266e-14	4.839893e-10	1.512466e-11
33	7913896	7976407	BC009073	FAM181A	0.656663	2.831440e-14	4.906035e-10	1.486677e-11
34	7913896	8073623	NM_001044370	MPPED1	0.655493	3.258626e-14	5.646221e-10	1.660653e-11
35	7913896	8153322	NM_015193	ARC	0.655267	3.347873e-14	5.800859e-10	1.657388e-11
36	7913896	8075934	NM_014550	CARD10	0.655147	3.396390e-14	5.884924e-10	1.634701e-11
37	7913896	8054092	NM_015348	TMEM131	-0.655144	3.397780e-14	5.887334e-10	1.591171e-11
38	7913896	8013384	NM_000691	ALDH3A1	0.653861	3.960322e-14	6.862050e-10	1.805803e-11
39	7913896	8036699	NM_001080468	SYCN	0.653248	4.259838e-14	7.381021e-10	1.892570e-11
40	7913896	8153101	NM_152888	COL22A1	0.652407	4.706809e-14	8.155488e-10	2.038872e-11
41	7913896	7952752	NM_007037	ADAMTS8	0.652304	4.764579e-14	8.255586e-10	2.013558e-11
42	7913896	8160472	NM_001004125	TUSC1	0.652186	4.831251e-14	8.371109e-10	1.993121e-11
43	7913896	7977216	NM_015656	KIF26A	0.652025	4.924701e-14	8.533030e-10	1.984425e-11
44	7913896	8032023	NM_016585	THEG	0.651624	5.163774e-14	8.947272e-10	2.033471e-11
45	7913896	8067867	ENST00000364942		0.651133	5.471294e-14	9.480111e-10	2.106691e-11
46	7913896	8036460	NM_004647	DPF1	0.650043	6.220203e-14	1.077775e-9	2.342988e-11
47	7913896	8157751	NM_004789	LHX2	0.649982	6.264682e-14	1.085481e-9	2.309535e-11
48	7913896	7945536	NM_016564	CEND1	0.649763	6.428341e-14	1.113839e-9	2.320497e-11
49	7913896	7947991	NM_015231	NUP160	-0.649383	6.720755e-14	1.164505e-9	2.376541e-11
50	7913896	7949015	NM_001144936	C11orf95	0.649159	6.899189e-14	1.195422e-9	2.390845e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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