[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4942	7981943	NR_022008	PAR5		Prader-Willi/Angelman syndrome-5

Fetching correlation data, please wait...
Getting list of correlations for id 4942.
Getting list of p-values for id 4942.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981943	7925364	NM_018072	HEATR1	0.823759	3.899956e-27	6.757455e-23	6.757455e-23
2	7981943	7928306	ENST00000363300		0.811411	9.121183e-26	1.580427e-21	7.902137e-22
3	7981943	7969794	AY358798	LOC100132099	0.794120	5.207666e-24	9.023323e-20	3.007774e-20
4	7981943	8000192	ENST00000198767		0.785999	3.053556e-23	5.290896e-19	1.322724e-19
5	7981943	8031827	NM_032828	ZNF587	0.784947	3.818825e-23	6.616879e-19	1.323376e-19
6	7981943	8103106	NM_006726	LRBA	0.783582	5.093375e-23	8.825291e-19	1.470882e-19
7	7981943	8097792	NR_000007	SNORD73A	0.781746	7.480623e-23	1.296168e-18	1.851668e-19
8	7981943	7972190	NM_022118	RBM26	0.780776	9.150677e-23	1.585538e-18	1.981922e-19
9	7981943	8092035	NM_024947	PHC3	0.780008	1.072688e-22	1.858647e-18	2.065163e-19
10	7981943	7953878	NM_001004419	CLEC2D	0.776931	2.014158e-22	3.489931e-18	3.489931e-19
11	7981943	8154333	NM_015061	KDM4C	0.775979	2.442310e-22	4.231791e-18	3.847082e-19
12	7981943	8130129	NM_198887	NUP43	0.775785	2.540004e-22	4.401064e-18	3.667554e-19
13	7981943	8145136	NM_005605	PPP3CC	0.775523	2.677923e-22	4.640038e-18	3.569260e-19
14	7981943	8054614	NM_022662	ANAPC1	0.773277	4.201516e-22	7.279967e-18	5.199977e-19
15	7981943	8092095	NM_015028	TNIK	0.771744	5.696990e-22	9.871175e-18	6.580783e-19
16	7981943	7917156	NM_003902	FUBP1	0.769355	9.112857e-22	1.578985e-17	9.868654e-19
17	7981943	8014551	NM_007247	SYNRG	0.768144	1.153735e-21	1.999076e-17	1.175927e-18
18	7981943	8168316	NM_181672	OGT	0.767088	1.415766e-21	2.453097e-17	1.362832e-18
19	7981943	8122409	NM_003630	PEX3	0.765416	1.952977e-21	3.383923e-17	1.781012e-18
20	7981943	8020630	NM_153211	TTC39C	0.765155	2.053144e-21	3.557483e-17	1.778741e-18
21	7981943	8059413	NM_014689	DOCK10	0.763773	2.672124e-21	4.629990e-17	2.204757e-18
22	7981943	7916443	NM_015306	USP24	0.762874	3.168832e-21	5.490635e-17	2.495743e-18
23	7981943	8149315	BC132953		0.759795	5.650609e-21	9.790810e-17	4.256874e-18
24	7981943	7968787	NR_002822	MGC72080	0.759386	6.097798e-21	1.056565e-16	4.402356e-18
25	7981943	8045887	NR_002822	MGC72080	0.759267	6.233489e-21	1.080077e-16	4.320307e-18
26	7981943	8054054	NM_025190	ANKRD36B	0.758628	7.018527e-21	1.216100e-16	4.677308e-18
27	7981943	7971241	NR_002822	MGC72080	0.758427	7.284600e-21	1.262203e-16	4.674824e-18
28	7981943	8139896	NR_022007	PMS2L4	0.758317	7.434778e-21	1.288224e-16	4.600800e-18
29	7981943	8111455	NR_003504	GUSBL1	0.757324	8.931460e-21	1.547554e-16	5.336393e-18
30	7981943	7904930	NM_016334	GPR89B	0.756494	1.040330e-20	1.802580e-16	6.008601e-18
31	7981943	8051928	NM_006036	PREPL	0.756233	1.091265e-20	1.890836e-16	6.099469e-18
32	7981943	7919251	NM_016334	GPR89B	0.756022	1.134338e-20	1.965468e-16	6.142088e-18
33	7981943	8112558	NR_003504	GUSBL1	0.755930	1.153500e-20	1.998670e-16	6.056575e-18
34	7981943	8020930	NM_018255	ELP2	0.755785	1.184499e-20	2.052382e-16	6.036418e-18
35	7981943	8154793	NM_002504	NFX1	0.755669	1.209986e-20	2.096542e-16	5.990121e-18
36	7981943	7969881	NM_003291	TPP2	0.754909	1.389869e-20	2.408227e-16	6.689518e-18
37	7981943	8051464	NM_019024	HEATR5B	0.754871	1.399484e-20	2.424886e-16	6.553745e-18
38	7981943	8074925	NR_024448	LOC91316	0.753944	1.656147e-20	2.869606e-16	7.551594e-18
39	7981943	7916185	NM_001009881	ZCCHC11	0.751366	2.634795e-20	4.565310e-16	1.170592e-17
40	7981943	8107375	NM_022828	YTHDC2	0.751104	2.761303e-20	4.784509e-16	1.196127e-17
41	7981943	8083445	ENST00000364347		0.750374	3.145689e-20	5.450535e-16	1.329399e-17
42	7981943	8114861	NM_020117	LARS	0.750276	3.200892e-20	5.546185e-16	1.320520e-17
43	7981943	8099570	BC050697	DCAF16	0.750057	3.328430e-20	5.767170e-16	1.341202e-17
44	7981943	8053834	NM_025190	ANKRD36B	0.748873	4.106427e-20	7.115206e-16	1.617092e-17
45	7981943	8105995	AK289851	SMA5	0.748775	4.177653e-20	7.238620e-16	1.608582e-17
46	7981943	8041283	NM_016252	BIRC6	0.748759	4.190182e-20	7.260329e-16	1.578332e-17
47	7981943	8052845	NM_022173	TIA1	0.748545	4.351536e-20	7.539906e-16	1.604235e-17
48	7981943	7972069	NM_015057	MYCBP2	0.748065	4.735699e-20	8.205546e-16	1.709489e-17
49	7981943	7995631	NM_005611	RBL2	0.747984	4.803785e-20	8.323518e-16	1.698677e-17
50	7981943	7926565	NM_004641	MLLT10	0.747485	5.244939e-20	9.087905e-16	1.817581e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation