[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
951	8012383	NM_032354	TMEM107		transmembrane protein 107

Fetching correlation data, please wait...
Getting list of correlations for id 951.
Getting list of p-values for id 951.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8012383	8165462	NM_013366	ANAPC2	0.506285	3.589477e-8	6.219486e-4	6.219486e-4
2	8012383	8177782	NM_024839	RPP21	0.501506	5.049622e-8	8.749480e-4	4.374740e-4
3	8012383	8179097	NM_024839	RPP21	0.501506	5.049622e-8	8.749480e-4	2.916493e-4
4	8012383	8062206	NM_080748	ROMO1	0.501356	5.103692e-8	8.843167e-4	2.210792e-4
5	8012383	8117881	NM_024839	RPP21	0.492328	9.586734e-8	1.661093e-3	3.322187e-4
6	8012383	7996571	NM_024519	FAM65A	0.490152	1.112930e-7	1.928375e-3	3.213958e-4
7	8012383	8073612	NM_000714	TSPO	0.485710	1.504554e-7	2.606940e-3	3.724200e-4
8	8012383	8033069	NM_175614	NDUFA11	0.482563	1.858042e-7	3.219429e-3	4.024286e-4
9	8012383	8074842	NM_001130111	FAM108A1	0.481486	1.996143e-7	3.458718e-3	3.843020e-4
10	8012383	8139468	NM_004749	TBRG4	0.477991	2.515029e-7	4.357791e-3	4.357791e-4
11	8012383	7904948	NM_001130111	FAM108A1	0.474867	3.085448e-7	5.346155e-3	4.860141e-4
12	8012383	7904869	NM_001130111	FAM108A1	0.474867	3.085448e-7	5.346155e-3	4.455129e-4
13	8012383	7911422	NM_016547	SDF4	0.469288	4.422461e-7	7.662799e-3	5.894461e-4
14	8012383	8001981	NM_013241	FHOD1	0.465041	5.792200e-7	1.003614e-2	7.168675e-4
15	8012383	8178517	NM_001145466	NCR3	0.462067	6.981690e-7	1.209717e-2	8.064783e-4
16	8012383	8179773	NM_001145466	NCR3	0.462067	6.981690e-7	1.209717e-2	7.560734e-4
17	8012383	8124955	NM_001145466	NCR3	0.462067	6.981690e-7	1.209717e-2	7.115985e-4
18	8012383	7911486	NM_017871	CPSF3L	0.458255	8.847723e-7	1.533045e-2	8.516916e-4
19	8012383	7899323	NM_032872	SYTL1	0.456677	9.751407e-7	1.689626e-2	8.892770e-4
20	8012383	7899310	NM_032125	TMEM222	0.455730	1.033460e-6	1.790677e-2	8.953383e-4
21	8012383	8159654	NM_015456	COBRA1	0.454530	1.112119e-6	1.926969e-2	9.176042e-4
22	8012383	7973427	NM_024328	THTPA	0.453092	1.213892e-6	2.103310e-2	9.560499e-4
23	8012383	7915827	NM_006369	LRRC41	0.447927	1.657186e-6	2.871406e-2	1.248437e-3
24	8012383	7903906			0.447781	1.671688e-6	2.896534e-2	1.206889e-3
25	8012383	8028563	NM_021107	MRPS12	0.446395	1.815688e-6	3.146042e-2	1.258417e-3
26	8012383	8026170	NM_030818	CCDC130	0.446290	1.827053e-6	3.165735e-2	1.217590e-3
27	8012383	8165258	NM_006412	AGPAT2	0.445249	1.943498e-6	3.367499e-2	1.247222e-3
28	8012383	8158544	NM_014064	METTL11A	0.444991	1.973387e-6	3.419288e-2	1.221174e-3
29	8012383	8010550	NM_024591	CHMP6	0.443174	2.196952e-6	3.806659e-2	1.312641e-3
30	8012383	8099037	NM_001146069	MFSD10	0.442906	2.231883e-6	3.867183e-2	1.289061e-3
31	8012383	8074939	NM_213720	CHCHD10	0.437694	3.024848e-6	5.241155e-2	1.690695e-3
32	8012383	8006877	NM_006804	STARD3	0.437266	3.100719e-6	5.372617e-2	1.678943e-3
33	8012383	8023220	NM_005904	SMAD7	0.437155	3.120746e-6	5.407317e-2	1.638581e-3
34	8012383	8163930	NM_014222	NDUFA8	0.435569	3.419176e-6	5.924407e-2	1.742473e-3
35	8012383	8033002	NM_004793	LONP1	0.435475	3.437715e-6	5.956528e-2	1.701865e-3
36	8012383	8090420	NM_016372	TPRA1	0.434146	3.709939e-6	6.428211e-2	1.785614e-3
37	8012383	8037389	NM_019108	C19orf61	0.432592	4.054092e-6	7.024525e-2	1.898520e-3
38	8012383	8002057	NM_001082486	ACD	0.432136	4.160633e-6	7.209128e-2	1.897139e-3
39	8012383	8026991	NM_017712	PGPEP1	0.431310	4.360266e-6	7.555033e-2	1.937188e-3
40	8012383	8018343	NM_020679	MIF4GD	0.431165	4.396159e-6	7.617224e-2	1.904306e-3
41	8012383	8036136	NM_024660	TMEM149	0.429122	4.934126e-6	8.549361e-2	2.085210e-3
42	8012383	7949603	NM_015399	BRMS1	0.429004	4.966931e-6	8.606202e-2	2.049096e-3
43	8012383	8027876	NM_032635	TMEM147	0.428976	4.974751e-6	8.619752e-2	2.004593e-3
44	8012383	7985099	NM_003978	PSTPIP1	0.426836	5.609157e-6	9.718987e-2	2.208861e-3
45	8012383	8116348	NM_198868	TBC1D9B	0.426490	5.718584e-6	9.908591e-2	2.201909e-3
46	8012383	8027205	NM_015965	NDUFA13	0.425518	6.037074e-6	1.046044e-1	2.274008e-3
47	8012383	8090591	NM_015103	PLXND1	0.425373	6.086095e-6	1.054538e-1	2.243697e-3
48	8012383	8135856	NM_001662	ARF5	0.422581	7.103708e-6	1.230859e-1	2.564291e-3
49	8012383	8119829	NM_001146018	TJAP1	0.421726	7.446529e-6	1.290260e-1	2.633184e-3
50	8012383	8158406	NM_018201	TBC1D13	0.420470	7.977794e-6	1.382312e-1	2.764625e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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