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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
641 8030220 NM_003660 PPFIA3 link to infopage protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3

Fetching correlation data, please wait...
Getting list of correlations for id 641.
Getting list of p-values for id 641.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8030220 8067602 NM_152864 NKAIN4 link to infopage 0.809913 1.316142e-25 2.280479e-21 2.280479e-21
2 8030220 8125234 NM_019105 TNXB link to infopage 0.787031 2.449334e-23 4.243961e-19 2.121980e-19
3 8030220 7955305 NM_001652 AQP6 link to infopage 0.786364 2.824901e-23 4.894706e-19 1.631569e-19
4 8030220 8116272 NM_014244 ADAMTS2 link to infopage 0.786287 2.871499e-23 4.975447e-19 1.243862e-19
5 8030220 8039362 NM_178837 C19orf51 link to infopage 0.782438 6.475024e-23 1.121927e-18 2.243855e-19
6 8030220 8086985 NM_000094 COL7A1 link to infopage 0.780831 9.047235e-23 1.567614e-18 2.612691e-19
7 8030220 7945688 NR_003512 INS-IGF2 link to infopage 0.780802 9.101426e-23 1.577004e-18 2.252863e-19
8 8030220 7992302 NM_020825 CRAMP1L link to infopage 0.779633 1.158717e-22 2.007709e-18 2.509637e-19
9 8030220 8096556 NM_015143 METAP1 link to infopage -0.778286 1.527796e-22 2.647212e-18 2.941347e-19
10 8030220 8125568 NM_080680 COL11A2 link to infopage 0.778028 1.610674e-22 2.790815e-18 2.790815e-19
11 8030220 7915297 NM_001852 COL9A2 link to infopage 0.776034 2.415710e-22 4.185700e-18 3.805182e-19
12 8030220 8060126 NM_198998 AQP12A link to infopage 0.774518 3.278116e-22 5.679992e-18 4.733326e-19
13 8030220 7914361 NM_001856 COL16A1 link to infopage 0.773427 4.077514e-22 7.065108e-18 5.434699e-19
14 8030220 7937560 NM_002457 MUC2 link to infopage 0.771795 5.639269e-22 9.771162e-18 6.979401e-19
15 8030220 7987792 NM_178034 PLA2G4D link to infopage 0.771460 6.025739e-22 1.044080e-17 6.960532e-19
16 8030220 7934544 NM_144589 COMTD1 link to infopage 0.770407 7.414063e-22 1.284635e-17 8.028966e-19
17 8030220 8064111 NM_032957 RTEL1 link to infopage 0.770270 7.616731e-22 1.319751e-17 7.763241e-19
18 8030220 8153704 NM_031309 SCRT1 link to infopage 0.770155 7.791454e-22 1.350025e-17 7.500140e-19
19 8030220 8034151 NM_020812 DOCK6 link to infopage 0.769690 8.533730e-22 1.478639e-17 7.782313e-19
20 8030220 7970241 NM_000504 F10 link to infopage 0.769050 9.672148e-22 1.675893e-17 8.379465e-19
21 8030220 8104592 NM_012304 FBXL7 link to infopage 0.768824 1.010713e-21 1.751263e-17 8.339346e-19
22 8030220 8153101 NM_152888 COL22A1 link to infopage 0.768368 1.104567e-21 1.913883e-17 8.699469e-19
23 8030220 8032699 NM_015174 ZFR2 link to infopage 0.767977 1.191679e-21 2.064823e-17 8.977492e-19
24 8030220 7990928 ENST00000342039 link to infopage 0.767966 1.194221e-21 2.069226e-17 8.621775e-19
25 8030220 7985418 ENST00000342039 link to infopage 0.767966 1.194221e-21 2.069226e-17 8.276904e-19
26 8030220 7985459 ENST00000342039 link to infopage 0.767966 1.194221e-21 2.069226e-17 7.958562e-19
27 8030220 7897132 NM_022114 PRDM16 link to infopage 0.764830 2.184724e-21 3.785471e-17 1.402026e-18
28 8030220 7927367 NM_001040084 ANXA8 link to infopage 0.764353 2.392692e-21 4.145817e-17 1.480649e-18
29 8030220 8157383 NM_032888 COL27A1 link to infopage 0.764249 2.440879e-21 4.229312e-17 1.458383e-18
30 8030220 7906307 NM_018240 KIRREL link to infopage 0.763676 2.721986e-21 4.716385e-17 1.572128e-18
31 8030220 8028407 NM_000540 RYR1 link to infopage 0.760410 5.036905e-21 8.727445e-17 2.815305e-18
32 8030220 8075200 NM_012265 RHBDD3 link to infopage 0.759268 6.233185e-21 1.080024e-16 3.375075e-18
33 8030220 8131056 NM_017781 CYP2W1 link to infopage 0.758776 6.829047e-21 1.183269e-16 3.585663e-18
34 8030220 8038725 NM_002776 KLK10 link to infopage 0.758399 7.323557e-21 1.268953e-16 3.732214e-18
35 8030220 7996468 NM_024712 ELMO3 link to infopage 0.757812 8.162450e-21 1.414308e-16 4.040879e-18
36 8030220 8024768 NM_133475 ANKRD24 link to infopage 0.755636 1.217207e-20 2.109054e-16 5.858484e-18
37 8030220 8067011 NM_015339 ADNP link to infopage -0.755088 1.345382e-20 2.331143e-16 6.300387e-18
38 8030220 8098895 NM_001013622 FAM53A link to infopage 0.754437 1.514500e-20 2.624174e-16 6.905721e-18
39 8030220 7987701 NM_016642 SPTBN5 link to infopage 0.754356 1.536977e-20 2.663121e-16 6.828515e-18
40 8030220 8027556 NM_002333 LRP3 link to infopage 0.754321 1.546594e-20 2.679783e-16 6.699458e-18
41 8030220 8174389 NM_033641 COL4A6 link to infopage 0.753230 1.884494e-20 3.265263e-16 7.964056e-18
42 8030220 8142830 NM_199349 KCP link to infopage 0.753128 1.919508e-20 3.325932e-16 7.918885e-18
43 8030220 8024605 NM_021938 CELF5 link to infopage 0.753030 1.953730e-20 3.385229e-16 7.872625e-18
44 8030220 7935535 NM_018058 CRTAC1 link to infopage 0.752608 2.108357e-20 3.653150e-16 8.302614e-18
45 8030220 7983663 NM_005154 USP8 link to infopage -0.752588 2.115948e-20 3.666304e-16 8.147341e-18
46 8030220 8067409 NM_005560 LAMA5 link to infopage 0.752275 2.238404e-20 3.878483e-16 8.431484e-18
47 8030220 7920027 NM_007185 CELF3 link to infopage 0.751727 2.469994e-20 4.279759e-16 9.105869e-18
48 8030220 8159670 NM_006647 NOXA1 link to infopage 0.751689 2.486585e-20 4.308505e-16 8.976053e-18
49 8030220 8004842 NM_173728 ARHGEF15 link to infopage 0.751215 2.707268e-20 4.690883e-16 9.573232e-18
50 8030220 7977105 NM_152307 TRMT61A link to infopage 0.750981 2.822448e-20 4.890456e-16 9.780911e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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