[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6132	8009995	NM_001080419	UNK		unkempt homolog (Drosophila)

Fetching correlation data, please wait...
Getting list of correlations for id 6132.
Getting list of p-values for id 6132.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.109 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8009995	8013860	NM_078471	MYO18A	0.642810	1.438068e-13	2.491741e-9	2.491741e-9
2	8009995	7939657	NM_001105540	DGKZ	0.626819	8.490985e-13	1.471233e-8	7.356165e-9
3	8009995	8025788	NM_001128849	SMARCA4	0.624665	1.070282e-12	1.854478e-8	6.181594e-9
4	8009995	7916135	NM_032449	CC2D1B	0.615761	2.734656e-12	4.738339e-8	1.184585e-8
5	8009995	7986541	NR_003659	WASH3P	0.605642	7.667727e-12	1.328587e-7	2.657174e-8
6	8009995	8006788	NM_005937	MLLT6	0.604020	9.014524e-12	1.561947e-7	2.603244e-8
7	8009995	8041826	NM_020458	TTC7A	0.595968	1.986956e-11	3.442799e-7	4.918285e-8
8	8009995	8044649	NR_024077	WASH2P	0.586590	4.854231e-11	8.410926e-7	1.051366e-7
9	8009995	8037794	NM_016457	PRKD2	0.586420	4.932414e-11	8.546393e-7	9.495993e-8
10	8009995	8004431	NM_000937	POLR2A	0.582127	7.352481e-11	1.273964e-6	1.273964e-7
11	8009995	8029147	NM_199002	ARHGEF1	0.581158	8.039117e-11	1.392938e-6	1.266307e-7
12	8009995	8071823	NM_012295	CABIN1	0.580397	8.621836e-11	1.493906e-6	1.244921e-7
13	8009995	8076185	NM_175709	CBX7	0.576657	1.212647e-10	2.101153e-6	1.616272e-7
14	8009995	8011516	NM_174954	ATP2A3	0.576221	1.261473e-10	2.185753e-6	1.561252e-7
15	8009995	7930031	NM_004193	GBF1	0.575743	1.317204e-10	2.282320e-6	1.521546e-7
16	8009995	8034482	NM_001136196	TNPO2	0.570326	2.139363e-10	3.706874e-6	2.316796e-7
17	8009995	8010638	NM_004712	HGS	0.569770	2.247491e-10	3.894228e-6	2.290722e-7
18	8009995	7985099	NM_003978	PSTPIP1	0.563595	3.861327e-10	6.690521e-6	3.716956e-7
19	8009995	8031176	NM_052925	LENG8	0.563458	3.907628e-10	6.770746e-6	3.563551e-7
20	8009995	8077595	NM_001003694	BRPF1	0.563269	3.971932e-10	6.882166e-6	3.441083e-7
21	8009995	8141425	NM_005641	TAF6	0.560852	4.893436e-10	8.478856e-6	4.037551e-7
22	8009995	7994386	NM_007245	ATXN2L	0.559399	5.542704e-10	9.603842e-6	4.365383e-7
23	8009995	8009796	NM_014738	KIAA0195	0.559002	5.734121e-10	9.935512e-6	4.319788e-7
24	8009995	7959123	NM_006253	PRKAB1	0.558685	5.891350e-10	1.020794e-5	4.253309e-7
25	8009995	7899323	NM_032872	SYTL1	0.557384	6.582039e-10	1.140470e-5	4.561880e-7
26	8009995	8116113	NR_024019	FAM193B	0.556402	7.153573e-10	1.239500e-5	4.767306e-7
27	8009995	8031122	NM_014516	CNOT3	0.553686	8.995090e-10	1.558579e-5	5.772516e-7
28	8009995	8171066	NR_024540	WASH7P	0.553410	9.205805e-10	1.595090e-5	5.696750e-7
29	8009995	7949465	NM_021975	RELA	0.553197	9.371058e-10	1.623723e-5	5.599046e-7
30	8009995	8153568	NM_201384	PLEC	0.552720	9.752951e-10	1.689894e-5	5.632979e-7
31	8009995	8016628	NM_032595	PPP1R9B	0.551862	1.047789e-9	1.815504e-5	5.856466e-7
32	8009995	7923233	NM_017596	KIF21B	0.549986	1.224796e-9	2.122205e-5	6.631890e-7
33	8009995	8080320	NM_007184	NISCH	0.548994	1.329682e-9	2.303940e-5	6.981635e-7
34	8009995	8066641	NM_022095	ZNF335	0.548570	1.376976e-9	2.385886e-5	7.017311e-7
35	8009995	8065612	NM_080616	C20orf112	0.548550	1.379265e-9	2.389852e-5	6.828149e-7
36	8009995	7962951	NM_003482	MLL2	0.548546	1.379715e-9	2.390633e-5	6.640647e-7
37	8009995	7977373	NM_004689	MTA1	0.548169	1.423351e-9	2.466240e-5	6.665513e-7
38	8009995	8132617	NM_031449	ZMIZ2	0.547786	1.468959e-9	2.545265e-5	6.698067e-7
39	8009995	8118682	NR_027692	PHF1	0.546002	1.700635e-9	2.946690e-5	7.555614e-7
40	8009995	7911309	NR_024540	WASH7P	0.545456	1.778373e-9	3.081387e-5	7.703468e-7
41	8009995	8141180	NM_015395	TECPR1	0.545115	1.828455e-9	3.168164e-5	7.727228e-7
42	8009995	8178790	NM_022107	GPSM3	0.544421	1.934962e-9	3.352709e-5	7.982641e-7
43	8009995	8026548	NM_001130524	AP1M1	0.543315	2.116986e-9	3.668101e-5	8.530468e-7
44	8009995	7941537	NM_018026	PACS1	0.542897	2.189969e-9	3.794560e-5	8.624000e-7
45	8009995	7941879	NM_198517	TBC1D10C	0.542392	2.281353e-9	3.952901e-5	8.784224e-7
46	8009995	8013486	NM_015276	USP22	0.540474	2.662859e-9	4.613936e-5	1.003030e-6
47	8009995	7996685	NM_014329	EDC4	0.539608	2.854524e-9	4.946034e-5	1.052348e-6
48	8009995	7960666	NM_133476	ZNF384	0.538134	3.211588e-9	5.564719e-5	1.159317e-6
49	8009995	8179884	NM_006709	EHMT2	0.537664	3.334130e-9	5.777047e-5	1.178989e-6
50	8009995	8125172	NM_006709	EHMT2	0.537664	3.334130e-9	5.777047e-5	1.155409e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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