[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2472	7963689	NM_003717	NPFF		neuropeptide FF-amide peptide precursor

Fetching correlation data, please wait...
Getting list of correlations for id 2472.
Getting list of p-values for id 2472.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.080 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7963689	8171066	NR_024540	WASH7P	0.415857	1.025225e-5	1.776407e-1	1.776407e-1
2	7963689	7930559	AK027209		0.415018	1.072634e-5	1.858553e-1	9.292766e-2
3	7963689	7911309	NR_024540	WASH7P	0.409007	1.477893e-5	2.560746e-1	8.535819e-2
4	7963689	8178059	NM_021221	LY6G5B	0.405637	1.764068e-5	3.056600e-1	7.641499e-2
5	7963689	8159790	NR_024077	WASH2P	0.401877	2.144429e-5	3.715652e-1	7.431305e-2
6	7963689	8014603	NM_001123391	TBC1D3	0.400934	2.251123e-5	3.900521e-1	6.500868e-2
7	7963689	8071272	L20860	GP1BB	0.394966	3.051552e-5	5.287424e-1	7.553463e-2
8	7963689	7998119	NR_024540	WASH7P	0.392568	3.442572e-5	5.964944e-1	7.456180e-2
9	7963689	8044649	NR_024077	WASH2P	0.390012	3.910821e-5	6.776280e-1	7.529200e-2
10	7963689	7930537	NM_001146274	TCF7L2	0.389259	4.059701e-5	7.034244e-1	7.034244e-2
11	7963689	8014420	NM_001123390		0.388061	4.307423e-5	7.463471e-1	6.784974e-2
12	7963689	8014397	NM_001001418	TBC1D3C	0.388015	4.317246e-5	7.480493e-1	6.233744e-2
13	7963689	8114593	NM_133174	APBB3	0.386766	4.591414e-5	7.955543e-1	6.119649e-2
14	7963689	8014633	NM_001123390		0.385777	4.819599e-5	8.350920e-1	5.964943e-2
15	7963689	7997680	NM_014615	KIAA0182	0.385767	4.821993e-5	8.355067e-1	5.570045e-2
16	7963689	8118228	NM_021221	LY6G5B	0.384886	5.034593e-5	8.723439e-1	5.452149e-2
17	7963689	7928534	NM_032024	C10orf11	0.384521	5.125135e-5	8.880321e-1	5.223718e-2
18	7963689	8074577	NR_003700	PI4KAP2	0.383988	5.259906e-5	9.113839e-1	5.063244e-2
19	7963689	8019716	NM_001040282	TBC1D3G	0.380380	6.264586e-5	1.085465e+0	5.712973e-2
20	7963689	8068919	NM_003681	PDXK	0.379449	6.551255e-5	1.135136e+0	5.675680e-2
21	7963689	7986541	NR_003659	WASH3P	0.379063	6.673812e-5	1.156371e+0	5.506531e-2
22	7963689	7961998	ENST00000364742		-0.376084	7.693499e-5	1.333053e+0	6.059330e-2
23	7963689	7987475	NM_004573	PLCB2	0.371213	9.678248e-5	1.676950e+0	7.291087e-2
24	7963689	hsa-miR-340-3p			-0.371054	9.750197e-5	1.689417e+0	7.039236e-2
25	7963689	7919669	NM_001145862	MTMR11	0.366493	1.204731e-4	2.087438e+0	8.349753e-2
26	7963689	8014437	NM_001040282	TBC1D3G	0.366131	1.224943e-4	2.122460e+0	8.163306e-2
27	7963689	7944049	NM_001040455	SIDT2	0.365106	1.283925e-4	2.224657e+0	8.239471e-2
28	7963689	8006746	NM_001123391	TBC1D3	0.363494	1.382094e-4	2.394754e+0	8.552694e-2
29	7963689	8019655	NM_001001417	TBC1D3B	0.362949	1.416830e-4	2.454941e+0	8.465313e-2
30	7963689	hsa-miR-744-3p			-0.360765	1.564289e-4	2.710443e+0	9.034811e-2
31	7963689	8178771	NM_001136	AGER	0.358977	1.695537e-4	2.937857e+0	9.476958e-2
32	7963689	8125341	NM_001136	AGER	0.357728	1.793083e-4	3.106875e+0	9.708986e-2
33	7963689	7948839	NM_006362	NXF1	0.357662	1.798378e-4	3.116050e+0	9.442575e-2
34	7963689	8011774	NM_015099	CAMTA2	0.357483	1.812837e-4	3.141103e+0	9.238538e-2
35	7963689	7898276	ENST00000321418		-0.355626	1.969257e-4	3.412132e+0	9.748949e-2
36	7963689	8128737	NM_022765	MICAL1	0.354957	2.028577e-4	3.514916e+0	9.763655e-2
37	7963689	8014376	NM_001001417	TBC1D3B	0.353118	2.200226e-4	3.812332e+0	1.030360e-1
38	7963689	8171148	NM_001669	ARSD	0.351126	2.401324e-4	4.160774e+0	1.094941e-1
39	7963689	7992692	NM_016333	SRRM2	0.347271	2.839571e-4	4.920125e+0	1.261571e-1
40	7963689	8042942	NM_000189	HK2	0.343906	3.281351e-4	5.685597e+0	1.421399e-1
41	7963689	8052667	ENST00000446086		-0.343879	3.285100e-4	5.692094e+0	1.388316e-1
42	7963689	8077612	NM_001025930	TTLL3	0.343632	3.319922e-4	5.752429e+0	1.369626e-1
43	7963689	8172813	NM_014138	FAM156A	0.343576	3.327922e-4	5.766291e+0	1.340998e-1
44	7963689	8042811	NM_144993	TET3	0.342808	3.438641e-4	5.958133e+0	1.354121e-1
45	7963689	8008074	NM_176096	CDK5RAP3	0.342762	3.445322e-4	5.969709e+0	1.326602e-1
46	7963689	8179967	NM_001136	AGER	0.342175	3.532465e-4	6.120701e+0	1.330587e-1
47	7963689	7963698	NM_001130059	ATF7	0.341257	3.672670e-4	6.363636e+0	1.353965e-1
48	7963689	7964436	NM_032496	ARHGAP9	0.340938	3.722636e-4	6.450211e+0	1.343794e-1
49	7963689	8074748	NR_003700	PI4KAP2	0.340661	3.766481e-4	6.526182e+0	1.331874e-1
50	7963689	7942091	NM_139075	TPCN2	0.340443	3.801326e-4	6.586558e+0	1.317312e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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