[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7382	8080168	NM_000666	ACY1		aminoacylase 1

Fetching correlation data, please wait...
Getting list of correlations for id 7382.
Getting list of p-values for id 7382.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8080168	7913450	NM_005529	HSPG2	0.751999	2.352209e-20	4.075673e-16	4.075673e-16
2	8080168	8112121	NM_173514	SLC38A9	-0.740909	1.637191e-19	2.836760e-15	1.418380e-15
3	8080168	8093112	NM_015562	UBXN7	-0.736648	3.361935e-19	5.825224e-15	1.941741e-15
4	8080168	8108453	NM_032289	PSD2	0.731848	7.437050e-19	1.288618e-14	3.221544e-15
5	8080168	8039362	NM_178837	C19orf51	0.723515	2.836715e-18	4.915177e-14	9.830354e-15
6	8080168	7945162	NM_003658	BARX2	0.722145	3.518666e-18	6.096793e-14	1.016132e-14
7	8080168	8172580	NM_005183	CACNA1F	0.720958	4.235805e-18	7.339379e-14	1.048483e-14
8	8080168	8036232	NM_001039876	C19orf46	0.720015	4.906128e-18	8.500848e-14	1.062606e-14
9	8080168	7936762	NM_001001976	ATE1	-0.719074	5.676217e-18	9.835181e-14	1.092798e-14
10	8080168	8079021	NM_001904	CTNNB1	-0.718936	5.798637e-18	1.004730e-13	1.004730e-14
11	8080168	8008723	NM_000502	EPX	0.718196	6.500491e-18	1.126340e-13	1.023945e-14
12	8080168	7912968	NM_152232	TAS1R2	0.717055	7.746924e-18	1.342310e-13	1.118591e-14
13	8080168	8125234	NM_019105	TNXB	0.716497	8.438225e-18	1.462091e-13	1.124686e-14
14	8080168	7956120	NM_001982	ERBB3	0.716224	8.798203e-18	1.524465e-13	1.088903e-14
15	8080168	8138670	NM_031243	HNRNPA2B1	-0.716172	8.867564e-18	1.536483e-13	1.024322e-14
16	8080168	8149699	NM_001099335	PHYHIP	0.715687	9.550027e-18	1.654733e-13	1.034208e-14
17	8080168	8156783	NM_001855	COL15A1	0.710929	1.958121e-17	3.392836e-13	1.995786e-14
18	8080168	8036883	NM_144685	HIPK4	0.710840	1.984362e-17	3.438304e-13	1.910169e-14
19	8080168	7987701	NM_016642	SPTBN5	0.710703	2.025502e-17	3.509587e-13	1.847151e-14
20	8080168	7967727	NM_021808	GALNT9	0.710416	2.113928e-17	3.662804e-13	1.831402e-14
21	8080168	7918313	NM_001010985	MYBPHL	0.709746	2.335701e-17	4.047069e-13	1.927176e-14
22	8080168	7908437	NM_024529	CDC73	-0.708939	2.633065e-17	4.562312e-13	2.073778e-14
23	8080168	8019331	NM_001145113	MYADML2	0.708236	2.921521e-17	5.062120e-13	2.200922e-14
24	8080168	8060134	NM_004321	KIF1A	0.707229	3.388991e-17	5.872105e-13	2.446710e-14
25	8080168	8000978	NM_001039503	PRSS53	0.706857	3.579747e-17	6.202627e-13	2.481051e-14
26	8080168	8052024	NM_025133	FBXO11	-0.706445	3.802796e-17	6.589105e-13	2.534271e-14
27	8080168	7942693	NM_138706	B3GNT6	0.706390	3.833425e-17	6.642176e-13	2.460065e-14
28	8080168	8005328	NM_016239	MYO15A	0.704971	4.716687e-17	8.172604e-13	2.918787e-14
29	8080168	7974771	NM_022495	C14orf135	-0.704298	5.202453e-17	9.014291e-13	3.108376e-14
30	8080168	7945368	NM_001025295	IFITM5	0.704042	5.399091e-17	9.355005e-13	3.118335e-14
31	8080168	8098512	NM_021942	C4orf41	-0.703009	6.270919e-17	1.086562e-12	3.505039e-14
32	8080168	8061529	NM_014012	REM1	0.702484	6.764709e-17	1.172121e-12	3.662878e-14
33	8080168	8059028	NM_194302	CCDC108	0.702216	7.031238e-17	1.218303e-12	3.691826e-14
34	8080168	7910520	NM_014236	GNPAT	-0.701910	7.347346e-17	1.273075e-12	3.744337e-14
35	8080168	8087596	NM_003549	HYAL3	0.701611	7.670865e-17	1.329131e-12	3.797517e-14
36	8080168	8036072	NM_207392	KRTDAP	0.700209	9.376797e-17	1.624718e-12	4.513105e-14
37	8080168	7952893	BC024764	IQSEC3	0.700049	9.593731e-17	1.662306e-12	4.492718e-14
38	8080168	8038598	NM_016148	SHANK1	0.699594	1.023745e-16	1.773842e-12	4.668006e-14
39	8080168	8072160	NM_032173	ZNRF3	0.699378	1.055756e-16	1.829308e-12	4.690534e-14
40	8080168	7993024	NM_139170	C16orf71	0.699031	1.109119e-16	1.921770e-12	4.804425e-14
41	8080168	8067087	NM_020436	SALL4	0.698789	1.147998e-16	1.989137e-12	4.851553e-14
42	8080168	8017488	NM_022640	CSH1	0.698716	1.159879e-16	2.009722e-12	4.785051e-14
43	8080168	8118804	NM_020804	PACSIN1	0.698631	1.174008e-16	2.034204e-12	4.730707e-14
44	8080168	8092201	NM_024665	TBL1XR1	-0.698020	1.280234e-16	2.218262e-12	5.041505e-14
45	8080168	8109403	NR_024152	MFAP3	-0.697503	1.377326e-16	2.386493e-12	5.303317e-14
46	8080168	8078187	NM_015184	PLCL2	-0.697409	1.395738e-16	2.418395e-12	5.257380e-14
47	8080168	7922646	NM_022347	TOR1AIP2	-0.697332	1.411043e-16	2.444914e-12	5.201944e-14
48	8080168	7937560	NM_002457	MUC2	0.697226	1.432194e-16	2.481562e-12	5.169922e-14
49	8080168	8032699	NM_015174	ZFR2	0.697067	1.464718e-16	2.537918e-12	5.179424e-14
50	8080168	8072636	NM_001008494	ISX	0.697034	1.471580e-16	2.549806e-12	5.099612e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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