[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
909	8149699	NM_001099335	PHYHIP		phytanoyl-CoA 2-hydroxylase interacting protein

Fetching correlation data, please wait...
Getting list of correlations for id 909.
Getting list of p-values for id 909.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8149699	8111216	ENST00000426411		0.800475	1.233438e-24	2.137178e-20	2.137178e-20
2	8149699	7918313	NM_001010985	MYBPHL	0.781806	7.387603e-23	1.280050e-18	6.400250e-19
3	8149699	7942717	NM_000260	MYO7A	0.778673	1.411642e-22	2.445952e-18	8.153175e-19
4	8149699	8138474	NM_198956	SP8	0.777760	1.701107e-22	2.947507e-18	7.368769e-19
5	8149699	8023984	NM_001194	HCN2	0.775159	2.881979e-22	4.993604e-18	9.987209e-19
6	8149699	8012344	NM_032580	HES7	0.774738	3.136362e-22	5.434374e-18	9.057289e-19
7	8149699	8060134	NM_004321	KIF1A	0.771508	5.968729e-22	1.034202e-17	1.477431e-18
8	8149699	7984014	ENST00000391323		0.769881	8.220067e-22	1.424291e-17	1.780364e-18
9	8149699	7919564	ENST00000365297		0.764269	2.431277e-21	4.212673e-17	4.680748e-18
10	8149699	7896798	NM_032129	PLEKHN1	0.763311	2.917216e-21	5.054659e-17	5.054659e-18
11	8149699	8054804	NM_019044	CCDC93	-0.762892	3.158253e-21	5.472305e-17	4.974823e-18
12	8149699	7955184	NM_006262	PRPH	0.762133	3.645153e-21	6.315956e-17	5.263297e-18
13	8149699	8079021	NM_001904	CTNNB1	-0.761508	4.100353e-21	7.104681e-17	5.465139e-18
14	8149699	8038299	NM_033142	CGB7	0.760136	5.301965e-21	9.186714e-17	6.561939e-18
15	8149699	8062108	NM_006404	PROCR	0.759931	5.508592e-21	9.544737e-17	6.363158e-18
16	8149699	7936762	NM_001001976	ATE1	-0.758663	6.974041e-21	1.208392e-16	7.552451e-18
17	8149699	7940022	NM_178570	RTN4RL2	0.758626	7.020995e-21	1.216528e-16	7.156046e-18
18	8149699	7909064	NM_005076	CNTN2	0.758469	7.228446e-21	1.252473e-16	6.958182e-18
19	8149699	7936614	NM_003750	EIF3A	-0.757112	9.286159e-21	1.609013e-16	8.468489e-18
20	8149699	8036883	NM_144685	HIPK4	0.756281	1.081842e-20	1.874508e-16	9.372538e-18
21	8149699	8010783	NM_018949	UTS2R	0.755428	1.264315e-20	2.190679e-16	1.043180e-17
22	8149699	8100902	NM_032217	ANKRD17	-0.755246	1.307152e-20	2.264902e-16	1.029501e-17
23	8149699	7999841	NM_015092	SMG1	-0.754606	1.468656e-20	2.544740e-16	1.106409e-17
24	8149699	8156415	NM_006648	WNK2	0.754294	1.554285e-20	2.693110e-16	1.122129e-17
25	8149699	8056041			0.754292	1.554724e-20	2.693871e-16	1.077548e-17
26	8149699	7905025	NM_000798	DRD5	0.752869	2.011204e-20	3.484812e-16	1.340312e-17
27	8149699	7953021	NM_024551	ADIPOR2	-0.752115	2.303846e-20	3.991874e-16	1.478472e-17
28	8149699	8013833	NM_178860	SEZ6	0.751250	2.689972e-20	4.660914e-16	1.664612e-17
29	8149699	8034469	NM_032301	FBXW9	0.750750	2.941441e-20	5.096636e-16	1.757461e-17
30	8149699	7950136	NM_005169	PHOX2A	0.750072	3.319431e-20	5.751577e-16	1.917192e-17
31	8149699	8083887	NM_005602	CLDN11	0.749781	3.495391e-20	6.056463e-16	1.953698e-17
32	8149699	8099918	AK291454	UBE2K	0.749113	3.935150e-20	6.818435e-16	2.130761e-17
33	8149699	8013606	NM_000638	VTN	0.748155	4.661280e-20	8.076600e-16	2.447455e-17
34	8149699	7937560	NM_002457	MUC2	0.747694	5.055958e-20	8.760458e-16	2.576605e-17
35	8149699	7903632	NM_001408	CELSR2	0.747363	5.358289e-20	9.284307e-16	2.652659e-17
36	8149699	8033487	NM_032447	FBN3	0.747207	5.507336e-20	9.542561e-16	2.650711e-17
37	8149699	7913450	NM_005529	HSPG2	0.746910	5.802452e-20	1.005391e-15	2.717273e-17
38	8149699	7949679	NM_006946	SPTBN2	0.746883	5.829830e-20	1.010135e-15	2.658249e-17
39	8149699	8151609	NM_172239	REXO1L1	0.746423	6.318695e-20	1.094840e-15	2.807283e-17
40	8149699	7929840	NM_003987	PAX2	0.745971	6.837344e-20	1.184707e-15	2.961766e-17
41	8149699	8159554	NM_207309	UAP1L1	0.745478	7.451072e-20	1.291047e-15	3.148896e-17
42	8149699	8064242	NR_027686	NCRNA00176	0.745182	7.845689e-20	1.359422e-15	3.236720e-17
43	8149699	8028407	NM_000540	RYR1	0.744932	8.193812e-20	1.419742e-15	3.301725e-17
44	8149699	7945162	NM_003658	BARX2	0.743054	1.133721e-19	1.964399e-15	4.464542e-17
45	8149699	7925446			0.742563	1.233735e-19	2.137693e-15	4.750429e-17
46	8149699	8153838	NM_004260	RECQL4	0.742144	1.325664e-19	2.296977e-15	4.993429e-17
47	8149699	8107406	ENST00000410774		0.742009	1.356589e-19	2.350561e-15	5.001193e-17
48	8149699	7966389	NM_144671	FAM109A	0.741309	1.529299e-19	2.649816e-15	5.520451e-17
49	8149699	8042558	NM_024933	ANKRD53	0.740769	1.676708e-19	2.905232e-15	5.929045e-17
50	8149699	8104447	ENST00000410122		0.740389	1.789051e-19	3.099890e-15	6.199779e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation