[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 6 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
11973	7927305	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
13405	7927231	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
14104	7934451	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
14168	7933427	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
14418	7927353	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5
14419	7933331	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5

Fetching correlation data, please wait...
Getting list of correlations for id 11973.
Getting list of p-values for id 11973.
1 of 6 done.
Getting list of correlations for id 13405.
Getting list of p-values for id 13405.
2 of 6 done.
Getting list of correlations for id 14104.
Getting list of p-values for id 14104.
3 of 6 done.
Getting list of correlations for id 14168.
Getting list of p-values for id 14168.
4 of 6 done.
Getting list of correlations for id 14418.
Getting list of p-values for id 14418.
5 of 6 done.
Getting list of correlations for id 14419.
Getting list of p-values for id 14419.
6 of 6 done.
Calculating corrections for multiple testing (n=103962), please wait...
Done; whole program took 0.665 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7933331	7927353	NM_001144000	AGAP5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7927353	7933331	NM_001144000	AGAP5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7933427	7933405	NM_133446	AGAP4	0.987757	6.199566e-85	6.445192e-80	2.148397e-80
4	7933427	7933252	NM_133446	AGAP4	0.984434	1.338527e-79	1.391559e-74	3.478898e-75
5	7933427	7927552	NM_001077665	AGAP6	0.983608	1.881596e-78	1.956145e-73	3.912290e-74
6	7933427	7933574	NM_001077685	AGAP7	0.980130	3.469517e-74	3.606980e-69	6.011633e-70
7	7934451	7933427	NM_001144000	AGAP5	0.978912	7.203214e-73	7.488605e-68	1.069801e-68
8	7933427	7934451	NM_001144000	AGAP5	0.978912	7.203214e-73	7.488605e-68	9.360756e-69
9	7934451	7933405	NM_133446	AGAP4	0.977947	7.046032e-72	7.325195e-67	8.139106e-68
10	7934451	7933574	NM_001077685	AGAP7	0.974955	4.573329e-69	4.754524e-64	4.754524e-65
11	7934451	7933252	NM_133446	AGAP4	0.974168	2.208423e-68	2.295921e-63	2.087201e-64
12	7934451	7927552	NM_001077665	AGAP6	0.972481	5.505737e-67	5.723874e-62	4.769895e-63
13	7933331	7933427	NM_001144000	AGAP5	0.961994	7.031161e-60	7.309736e-55	5.622874e-56
14	7933427	7933331	NM_001144000	AGAP5	0.961994	7.031161e-60	7.309736e-55	5.221240e-56
15	7933427	7927353	NM_001144000	AGAP5	0.961994	7.031161e-60	7.309736e-55	4.873157e-56
16	7927353	7933427	NM_001144000	AGAP5	0.961994	7.031161e-60	7.309736e-55	4.568585e-56
17	7927353	7933252	NM_133446	AGAP4	0.960959	2.733369e-59	2.841665e-54	1.671568e-55
18	7933331	7933252	NM_133446	AGAP4	0.960959	2.733369e-59	2.841665e-54	1.578703e-55
19	7933331	7927552	NM_001077665	AGAP6	0.953586	1.678621e-55	1.745128e-50	9.184882e-52
20	7927353	7927552	NM_001077665	AGAP6	0.953586	1.678621e-55	1.745128e-50	8.725638e-52
21	7927353	7933574	NM_001077685	AGAP7	0.951616	1.358247e-54	1.412061e-49	6.724098e-51
22	7933331	7933574	NM_001077685	AGAP7	0.951616	1.358247e-54	1.412061e-49	6.418457e-51
23	7927353	7933405	NM_133446	AGAP4	0.950814	3.104248e-54	3.227238e-49	1.403147e-50
24	7933331	7933405	NM_133446	AGAP4	0.950814	3.104248e-54	3.227238e-49	1.344683e-50
25	7933331	7934451	NM_001144000	AGAP5	0.940306	5.085773e-50	5.287272e-45	2.114909e-46
26	7934451	7927353	NM_001144000	AGAP5	0.940306	5.085773e-50	5.287272e-45	2.033566e-46
27	7934451	7933331	NM_001144000	AGAP5	0.940306	5.085773e-50	5.287272e-45	1.958249e-46
28	7927353	7934451	NM_001144000	AGAP5	0.940306	5.085773e-50	5.287272e-45	1.888311e-46
29	7927305	7927231	NM_001144000	AGAP5	0.919727	1.265396e-43	1.315530e-38	4.536312e-40
30	7927231	7927305	NM_001144000	AGAP5	0.919727	1.265396e-43	1.315530e-38	4.385102e-40
31	7927231	7933427	NM_001144000	AGAP5	0.863079	2.523933e-32	2.623931e-27	8.464293e-29
32	7933427	7927231	NM_001144000	AGAP5	0.863079	2.523933e-32	2.623931e-27	8.199784e-29
33	7927231	7933405	NM_133446	AGAP4	0.852041	1.020403e-30	1.060831e-25	3.214640e-27
34	7927231	7927353	NM_001144000	AGAP5	0.851459	1.229867e-30	1.278594e-25	3.760571e-27
35	7927231	7933331	NM_001144000	AGAP5	0.851459	1.229867e-30	1.278594e-25	3.653127e-27
36	7927353	7927231	NM_001144000	AGAP5	0.851459	1.229867e-30	1.278594e-25	3.551651e-27
37	7933331	7927231	NM_001144000	AGAP5	0.851459	1.229867e-30	1.278594e-25	3.455660e-27
38	7933331	7927305	NM_001144000	AGAP5	0.849854	2.049492e-30	2.130693e-25	5.607087e-27
39	7927353	7927305	NM_001144000	AGAP5	0.849854	2.049492e-30	2.130693e-25	5.463315e-27
40	7927305	7933331	NM_001144000	AGAP5	0.849854	2.049492e-30	2.130693e-25	5.326732e-27
41	7927305	7927353	NM_001144000	AGAP5	0.849854	2.049492e-30	2.130693e-25	5.196812e-27
42	7927231	7927552	NM_001077665	AGAP6	0.846108	6.596141e-30	6.857480e-25	1.632733e-26
43	7934451	7927231	NM_001144000	AGAP5	0.845469	8.026482e-30	8.344492e-25	1.940579e-26
44	7927231	7934451	NM_001144000	AGAP5	0.845469	8.026482e-30	8.344492e-25	1.896475e-26
45	7927231	7933574	NM_001077685	AGAP7	0.843760	1.351183e-29	1.404717e-24	3.121593e-26
46	7927231	7933252	NM_133446	AGAP4	0.840470	3.617741e-29	3.761076e-24	8.176252e-26
47	7933427	7928890	NM_133447	AGAP11	0.834204	2.223253e-28	2.311339e-23	4.917742e-25
48	7927305	7934451	NM_001144000	AGAP5	0.829906	7.398432e-28	7.691558e-23	1.602408e-24
49	7934451	7927305	NM_001144000	AGAP5	0.829906	7.398432e-28	7.691558e-23	1.569706e-24
50	7927305	7933427	NM_001144000	AGAP5	0.826964	1.652655e-27	1.718133e-22	3.436266e-24

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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