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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
14019 7927552 NM_001077665 AGAP6 link to infopage ArfGAP with GTPase domain, ankyrin repeat and PH domain 6

Fetching correlation data, please wait...
Getting list of correlations for id 14019.
Getting list of p-values for id 14019.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.243 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7927552 7933252 NM_133446 AGAP4 link to infopage 0.995263 4.316976e-106 7.480025e-102 7.480025e-102
2 7927552 7933574 NM_001077685 AGAP7 link to infopage 0.994039 5.786248e-101 1.002583e-96 5.012916e-97
3 7927552 7933405 NM_133446 AGAP4 link to infopage 0.991847 5.520896e-94 9.566057e-90 3.188686e-90
4 7927552 7933427 NM_001144000 AGAP5 link to infopage 0.983608 1.881596e-78 3.260242e-74 8.150605e-75
5 7927552 7934451 NM_001144000 AGAP5 link to infopage 0.972481 5.505737e-67 9.539790e-63 1.907958e-63
6 7927552 7927353 NM_001144000 AGAP5 link to infopage 0.953586 1.678621e-55 2.908546e-51 4.847577e-52
7 7927552 7933331 NM_001144000 AGAP5 link to infopage 0.953586 1.678621e-55 2.908546e-51 4.155066e-52
8 7927552 7927231 NM_001144000 AGAP5 link to infopage 0.846108 6.596141e-30 1.142913e-25 1.428642e-26
9 7927552 8062492 NM_020336 RALGAPB link to infopage 0.807090 2.603905e-25 4.511786e-21 5.013096e-22
10 7927552 7927305 NM_001144000 AGAP5 link to infopage 0.801655 9.385836e-25 1.626284e-20 1.626284e-21
11 7927552 8014551 NM_007247 SYNRG link to infopage 0.801336 1.010825e-24 1.751457e-20 1.592233e-21
12 7927552 8012961 NM_006311 NCOR1 link to infopage 0.800079 1.351324e-24 2.341439e-20 1.951199e-21
13 7927552 7928890 NM_133447 AGAP11 link to infopage 0.799983 1.381616e-24 2.393927e-20 1.841482e-21
14 7927552 7920766 NM_018489 ASH1L link to infopage 0.798685 1.860103e-24 3.223001e-20 2.302144e-21
15 7927552 7989516 NM_003922 HERC1 link to infopage 0.795830 3.552440e-24 6.155313e-20 4.103542e-21
16 7927552 7907310 NM_015172 BAT2L2 link to infopage 0.792975 6.714814e-24 1.163476e-19 7.271724e-21
17 7927552 8001693 NM_016284 CNOT1 link to infopage 0.789618 1.401843e-23 2.428973e-19 1.428808e-20
18 7927552 7981192 NM_018036 ATG2B link to infopage 0.783449 5.237525e-23 9.075060e-19 5.041700e-20
19 7927552 8047865 NM_015040 PIKFYVE link to infopage 0.781038 8.667082e-23 1.501745e-18 7.903923e-20
20 7927552 7972069 NM_015057 MYCBP2 link to infopage 0.779463 1.200216e-22 2.079614e-18 1.039807e-19
21 7927552 8149793 NM_004901 ENTPD4 link to infopage 0.779253 1.253000e-22 2.171072e-18 1.033844e-19
22 7927552 8041283 NM_016252 BIRC6 link to infopage 0.777912 1.649248e-22 2.857652e-18 1.298933e-19
23 7927552 7900235 NM_012090 MACF1 link to infopage 0.774379 3.370705e-22 5.840421e-18 2.539313e-19
24 7927552 7913300 NM_016287 HP1BP3 link to infopage 0.774005 3.633245e-22 6.295324e-18 2.623052e-19
25 7927552 8111455 NR_003504 GUSBL1 link to infopage 0.773929 3.688815e-22 6.391609e-18 2.556644e-19
26 7927552 8074925 NR_024448 LOC91316 link to infopage 0.771635 5.821116e-22 1.008625e-17 3.879326e-19
27 7927552 8108510 NM_020690 ANKHD1-EIF4EBP3 link to infopage 0.771523 5.951047e-22 1.031138e-17 3.819030e-19
28 7927552 8145636 NM_024567 HMBOX1 link to infopage 0.770862 6.780351e-22 1.174831e-17 4.195827e-19
29 7927552 8112558 NR_003504 GUSBL1 link to infopage 0.765979 1.752794e-21 3.037066e-17 1.047264e-18
30 7927552 8105995 AK289851 SMA5 link to infopage 0.765933 1.768347e-21 3.064014e-17 1.021338e-18
31 7927552 8079869 NM_005778 RBM5 link to infopage 0.765594 1.887264e-21 3.270062e-17 1.054859e-18
32 7927552 8172119 NM_004229 MED14 link to infopage 0.765309 1.993386e-21 3.453939e-17 1.079356e-18
33 7927552 7999841 NM_015092 SMG1 link to infopage 0.763210 2.973460e-21 5.152115e-17 1.561247e-18
34 7927552 8163972 NM_001100588 RC3H2 link to infopage 0.761204 4.340829e-21 7.521355e-17 2.212163e-18
35 7927552 8154793 NM_002504 NFX1 link to infopage 0.761120 4.409858e-21 7.640961e-17 2.183132e-18
36 7927552 8015685 NM_001991 EZH1 link to infopage 0.760801 4.682135e-21 8.112736e-17 2.253538e-18
37 7927552 8155246 ENST00000363632 link to infopage 0.760346 5.098104e-21 8.833485e-17 2.387428e-18
38 7927552 8124469 BC171739 GUSBL1 link to infopage 0.758669 6.965387e-21 1.206893e-16 3.176033e-18
39 7927552 8105937 AK289851 SMA5 link to infopage 0.758231 7.554513e-21 1.308970e-16 3.356334e-18
40 7927552 8168316 NM_181672 OGT link to infopage 0.757131 9.253987e-21 1.603438e-16 4.008596e-18
41 7927552 7947894 NM_198700 CELF1 link to infopage 0.756527 1.034054e-20 1.791705e-16 4.370013e-18
42 7927552 8069910 NM_020706 SFRS15 link to infopage 0.755991 1.140704e-20 1.976498e-16 4.705948e-18
43 7927552 8140196 NM_001025202 STAG3L2 link to infopage 0.753400 1.827485e-20 3.166484e-16 7.363916e-18
44 7927552 8112491 AK289851 SMA5 link to infopage 0.752207 2.266120e-20 3.926506e-16 8.923877e-18
45 7927552 8133610 NM_001013739 STAG3L3 link to infopage 0.752143 2.292171e-20 3.971645e-16 8.825877e-18
46 7927552 8143733 NR_027788 ZNF767 link to infopage 0.751609 2.522669e-20 4.371028e-16 9.502236e-18
47 7927552 7919351 NM_183372 NBPF11 link to infopage 0.751340 2.647160e-20 4.586733e-16 9.759007e-18
48 7927552 7919271 NM_183372 NBPF11 link to infopage 0.750404 3.128901e-20 5.421447e-16 1.129468e-17
49 7927552 8068289 NM_138927 SON link to infopage 0.750303 3.185632e-20 5.519745e-16 1.126479e-17
50 7927552 8139977 NM_001013739 STAG3L3 link to infopage 0.749948 3.393324e-20 5.879613e-16 1.175923e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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