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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
14117 7933405 NM_133446 AGAP4 link to infopage ArfGAP with GTPase domain, ankyrin repeat and PH domain 4
14118 7933252 NM_133446 AGAP4 link to infopage ArfGAP with GTPase domain, ankyrin repeat and PH domain 4

Fetching correlation data, please wait...
Getting list of correlations for id 14117.
Getting list of p-values for id 14117.
1 of 2 done.
Getting list of correlations for id 14118.
Getting list of p-values for id 14118.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.225 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7933252 7927552 NM_001077665 AGAP6 link to infopage 0.995263 4.316976e-106 1.496005e-101 1.496005e-101
2 7933252 7933574 NM_001077685 AGAP7 link to infopage 0.994125 2.734012e-101 9.474445e-97 4.737222e-97
3 7933405 7927552 NM_001077665 AGAP6 link to infopage 0.991847 5.520896e-94 1.913211e-89 6.377372e-90
4 7933252 7933405 NM_133446 AGAP4 link to infopage 0.991733 1.129410e-93 3.913858e-89 9.784645e-90
5 7933405 7933252 NM_133446 AGAP4 link to infopage 0.991733 1.129410e-93 3.913858e-89 7.827716e-90
6 7933405 7933427 NM_001144000 AGAP5 link to infopage 0.987757 6.199566e-85 2.148397e-80 3.580662e-81
7 7933405 7933574 NM_001077685 AGAP7 link to infopage 0.986811 2.788110e-83 9.661916e-79 1.380274e-79
8 7933252 7933427 NM_001144000 AGAP5 link to infopage 0.984434 1.338527e-79 4.638530e-75 5.798163e-76
9 7933405 7934451 NM_001144000 AGAP5 link to infopage 0.977947 7.046032e-72 2.441732e-67 2.713035e-68
10 7933252 7934451 NM_001144000 AGAP5 link to infopage 0.974168 2.208423e-68 7.653069e-64 7.653069e-65
11 7933252 7933331 NM_001144000 AGAP5 link to infopage 0.960959 2.733369e-59 9.472216e-55 8.611106e-56
12 7933252 7927353 NM_001144000 AGAP5 link to infopage 0.960959 2.733369e-59 9.472216e-55 7.893513e-56
13 7933405 7933331 NM_001144000 AGAP5 link to infopage 0.950814 3.104248e-54 1.075746e-49 8.274970e-51
14 7933405 7927353 NM_001144000 AGAP5 link to infopage 0.950814 3.104248e-54 1.075746e-49 7.683900e-51
15 7933405 7927231 NM_001144000 AGAP5 link to infopage 0.852041 1.020403e-30 3.536104e-26 2.357402e-27
16 7933252 7927231 NM_001144000 AGAP5 link to infopage 0.840470 3.617741e-29 1.253692e-24 7.835575e-26
17 7933405 7928890 NM_133447 AGAP11 link to infopage 0.828952 9.618972e-28 3.333359e-23 1.960799e-24
18 7933252 8062492 NM_020336 RALGAPB link to infopage 0.811128 9.779301e-26 3.388919e-21 1.882733e-22
19 7933252 8014551 NM_007247 SYNRG link to infopage 0.808576 1.820631e-25 6.309215e-21 3.320639e-22
20 7933252 7920766 NM_018489 ASH1L link to infopage 0.805054 4.228781e-25 1.465442e-20 7.327210e-22
21 7933405 7927305 NM_001144000 AGAP5 link to infopage 0.804274 5.085271e-25 1.762250e-20 8.391666e-22
22 7933405 8014551 NM_007247 SYNRG link to infopage 0.803916 5.533062e-25 1.917427e-20 8.715579e-22
23 7933252 7989516 NM_003922 HERC1 link to infopage 0.803193 6.556134e-25 2.271963e-20 9.878098e-22
24 7933405 8012961 NM_006311 NCOR1 link to infopage 0.799543 1.528351e-24 5.296348e-20 2.206812e-21
25 7933252 7927305 NM_001144000 AGAP5 link to infopage 0.798575 1.907745e-24 6.611100e-20 2.644440e-21
26 7933252 8012961 NM_006311 NCOR1 link to infopage 0.797596 2.383932e-24 8.261277e-20 3.177414e-21
27 7933252 8149793 NM_004901 ENTPD4 link to infopage 0.797550 2.408742e-24 8.347256e-20 3.091576e-21
28 7933405 8062492 NM_020336 RALGAPB link to infopage 0.796462 3.081408e-24 1.067831e-19 3.813683e-21
29 7933252 7928890 NM_133447 AGAP11 link to infopage 0.794449 4.839462e-24 1.677067e-19 5.782991e-21
30 7933252 8001693 NM_016284 CNOT1 link to infopage 0.794126 5.200504e-24 1.802183e-19 6.007276e-21
31 7933252 7981192 NM_018036 ATG2B link to infopage 0.792219 7.934234e-24 2.749529e-19 8.869450e-21
32 7933405 7907310 NM_015172 BAT2L2 link to infopage 0.791806 8.690838e-24 3.011723e-19 9.411634e-21
33 7933252 7907310 NM_015172 BAT2L2 link to infopage 0.791772 8.755877e-24 3.034261e-19 9.194732e-21
34 7933252 7972069 NM_015057 MYCBP2 link to infopage 0.791744 8.808349e-24 3.052445e-19 8.977780e-21
35 7933405 7920766 NM_018489 ASH1L link to infopage 0.788007 1.986057e-23 6.882482e-19 1.966423e-20
36 7933252 8041283 NM_016252 BIRC6 link to infopage 0.785795 3.189062e-23 1.105138e-18 3.069827e-20
37 7933252 8111455 NR_003504 GUSBL1 link to infopage 0.783321 5.380821e-23 1.864670e-18 5.039648e-20
38 7933405 7989516 NM_003922 HERC1 link to infopage 0.781813 7.377365e-23 2.556552e-18 6.727768e-20
39 7933252 8047865 NM_015040 PIKFYVE link to infopage 0.781663 7.611259e-23 2.637606e-18 6.763091e-20
40 7933252 8074925 NR_024448 LOC91316 link to infopage 0.781287 8.230198e-23 2.852093e-18 7.130232e-20
41 7933252 8108510 NM_020690 ANKHD1-EIF4EBP3 link to infopage 0.780941 8.843452e-23 3.064610e-18 7.474658e-20
42 7933252 7900235 NM_012090 MACF1 link to infopage 0.780491 9.707310e-23 3.363971e-18 8.009455e-20
43 7933252 7913300 NM_016287 HP1BP3 link to infopage 0.780355 9.983678e-23 3.459744e-18 8.045916e-20
44 7933405 8001693 NM_016284 CNOT1 link to infopage 0.780174 1.036354e-22 3.591381e-18 8.162229e-20
45 7933252 8154793 NM_002504 NFX1 link to infopage 0.778708 1.401398e-22 4.856406e-18 1.079201e-19
46 7933405 7972069 NM_015057 MYCBP2 link to infopage 0.777190 1.910739e-22 6.621475e-18 1.439451e-19
47 7933405 8047865 NM_015040 PIKFYVE link to infopage 0.776720 2.102010e-22 7.284305e-18 1.549852e-19
48 7933252 8112558 NR_003504 GUSBL1 link to infopage 0.776044 2.410654e-22 8.353881e-18 1.740392e-19
49 7933252 8105995 AK289851 SMA5 link to infopage 0.774420 3.343007e-22 1.158486e-17 2.364257e-19
50 7933405 7900235 NM_012090 MACF1 link to infopage 0.773692 3.867362e-22 1.340196e-17 2.680391e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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