[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 14418.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
14418	7927353	NM_001144000	AGAP5		ArfGAP with GTPase domain, ankyrin repeat and PH domain 5

Fetching correlation data, please wait...
Getting list of correlations for id 14418.
Getting list of p-values for id 14418.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7927353	7933331	NM_001144000	AGAP5	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7927353	7933427	NM_001144000	AGAP5	0.961994	7.031161e-60	1.218289e-55	6.091446e-56
3	7927353	7933252	NM_133446	AGAP4	0.960959	2.733369e-59	4.736108e-55	1.578703e-55
4	7927353	7927552	NM_001077665	AGAP6	0.953586	1.678621e-55	2.908546e-51	7.271365e-52
5	7927353	7933574	NM_001077685	AGAP7	0.951616	1.358247e-54	2.353434e-50	4.706869e-51
6	7927353	7933405	NM_133446	AGAP4	0.950814	3.104248e-54	5.378730e-50	8.964551e-51
7	7927353	7934451	NM_001144000	AGAP5	0.940306	5.085773e-50	8.812119e-46	1.258874e-46
8	7927353	7927231	NM_001144000	AGAP5	0.851459	1.229867e-30	2.130990e-26	2.663738e-27
9	7927353	7927305	NM_001144000	AGAP5	0.849854	2.049492e-30	3.551155e-26	3.945728e-27
10	7927353	7928890	NM_133447	AGAP11	0.795922	3.480022e-24	6.029835e-20	6.029835e-21
11	7927353	8155246	ENST00000363632		0.772231	5.172850e-22	8.962997e-18	8.148179e-19
12	7927353	7897890	NM_015378	VPS13D	0.768249	1.130381e-21	1.958611e-17	1.632176e-18
13	7927353	8062492	NM_020336	RALGAPB	0.767817	1.229256e-21	2.129932e-17	1.638409e-18
14	7927353	8149793	NM_004901	ENTPD4	0.761339	4.232327e-21	7.333353e-17	5.238110e-18
15	7927353	7939434	NM_018259	TTC17	0.755956	1.148119e-20	1.989346e-16	1.326231e-17
16	7927353	8069910	NM_020706	SFRS15	0.754000	1.639443e-20	2.840663e-16	1.775414e-17
17	7927353	8051464	NM_019024	HEATR5B	0.752339	2.212709e-20	3.833960e-16	2.255271e-17
18	7927353	7989516	NM_003922	HERC1	0.747950	4.832536e-20	8.373335e-16	4.651853e-17
19	7927353	7920766	NM_018489	ASH1L	0.747737	5.017436e-20	8.693712e-16	4.575638e-17
20	7927353	8014551	NM_007247	SYNRG	0.747736	5.018657e-20	8.695827e-16	4.347913e-17
21	7927353	7913300	NM_016287	HP1BP3	0.746981	5.730108e-20	9.928559e-16	4.727885e-17
22	7927353	8001693	NM_016284	CNOT1	0.744586	8.699937e-20	1.507438e-15	6.851991e-17
23	7927353	7981192	NM_018036	ATG2B	0.743481	1.053394e-19	1.825216e-15	7.935724e-17
24	7927353	8168316	NM_181672	OGT	0.742902	1.163834e-19	2.016575e-15	8.402396e-17
25	7927353	8100902	NM_032217	ANKRD17	0.742299	1.290941e-19	2.236814e-15	8.947256e-17
26	7927353	7944195	NM_004788	UBE4A	0.737765	2.787632e-19	4.830129e-15	1.857742e-16
27	7927353	8154333	NM_015061	KDM4C	0.736887	3.230199e-19	5.596966e-15	2.072950e-16
28	7927353	7902269	NM_004768	SRSF11	0.735246	4.247058e-19	7.358878e-15	2.628171e-16
29	7927353	7999841	NM_015092	SMG1	0.734366	4.914226e-19	8.514880e-15	2.936166e-16
30	7927353	8000537	NR_003610	PDXDC2P	0.732014	7.238268e-19	1.254175e-14	4.180583e-16
31	7927353	8172119	NM_004229	MED14	0.731802	7.493117e-19	1.298332e-14	4.188169e-16
32	7927353	8111455	NR_003504	GUSBL1	0.731503	7.869339e-19	1.363520e-14	4.261001e-16
33	7927353	7907310	NM_015172	BAT2L2	0.731450	7.936566e-19	1.375169e-14	4.167178e-16
34	7927353	8008213	NM_007067	MYST2	0.729201	1.144026e-18	1.982254e-14	5.830158e-16
35	7927353	7972069	NM_015057	MYCBP2	0.728877	1.205417e-18	2.088626e-14	5.967503e-16
36	7927353	8074925	NR_024448	LOC91316	0.728023	1.383383e-18	2.396987e-14	6.658297e-16
37	7927353	8012961	NM_006311	NCOR1	0.725788	1.978589e-18	3.428302e-14	9.265681e-16
38	7927353	8105937	AK289851	SMA5	0.724353	2.484629e-18	4.305117e-14	1.132925e-15
39	7927353	8000156	ENST00000446231		0.724267	2.518984e-18	4.364643e-14	1.119139e-15
40	7927353	8000501	NR_003610	PDXDC2P	0.724264	2.520121e-18	4.366614e-14	1.091653e-15
41	7927353	7944223	NM_005933	MLL	0.724238	2.530253e-18	4.384169e-14	1.069310e-15
42	7927353	8105995	AK289851	SMA5	0.723668	2.768978e-18	4.797808e-14	1.142335e-15
43	7927353	8112558	NR_003504	GUSBL1	0.723516	2.836110e-18	4.914127e-14	1.142820e-15
44	7927353	7997239	NR_003610	PDXDC2P	0.723109	3.023896e-18	5.239504e-14	1.190796e-15
45	7927353	8124469	BC171739	GUSBL1	0.722319	3.423890e-18	5.932574e-14	1.318350e-15
46	7927353	7900235	NM_012090	MACF1	0.721137	4.119234e-18	7.137397e-14	1.551608e-15
47	7927353	8108510	NM_020690	ANKHD1-EIF4EBP3	0.720133	4.817053e-18	8.346507e-14	1.775853e-15
48	7927353	8077528	NM_001080517	SETD5	0.719878	5.011102e-18	8.682737e-14	1.808904e-15
49	7927353	8083429	NM_021038	MBNL1	0.719579	5.249304e-18	9.095470e-14	1.856218e-15
50	7927353	8112491	AK289851	SMA5	0.718778	5.942002e-18	1.029571e-13	2.059141e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
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