[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
749	8124942	NM_130463	ATP6V1G2		ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2
750	8179762	NM_130463	ATP6V1G2		ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2
2679	8178508	NM_130463	ATP6V1G2		ATPase, H+ transporting, lysosomal 13kDa, V1 subunit G2

Fetching correlation data, please wait...
Getting list of correlations for id 749.
Getting list of p-values for id 749.
1 of 3 done.
Getting list of correlations for id 750.
Getting list of p-values for id 750.
2 of 3 done.
Getting list of correlations for id 2679.
Getting list of p-values for id 2679.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.283 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8124942	8179762	NM_130463	ATP6V1G2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8179762	8124942	NM_130463	ATP6V1G2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8124942	8178508	NM_130463	ATP6V1G2	0.863184	2.433144e-32	1.264773e-27	4.215909e-28
4	8178508	8179762	NM_130463	ATP6V1G2	0.863184	2.433144e-32	1.264773e-27	3.161931e-28
5	8178508	8124942	NM_130463	ATP6V1G2	0.863184	2.433144e-32	1.264773e-27	2.529545e-28
6	8179762	8178508	NM_130463	ATP6V1G2	0.863184	2.433144e-32	1.264773e-27	2.107954e-28
7	8178508	7924342	NM_018713	SLC30A10	0.601548	1.151709e-11	5.986700e-7	8.552429e-8
8	8124942	8117748	NM_206814	MOG	0.587888	4.296977e-11	2.233612e-6	2.792015e-7
9	8179762	8117748	NM_206814	MOG	0.587888	4.296977e-11	2.233612e-6	2.481791e-7
10	8124942	8099218	NM_020416	PPP2R2C	0.586221	5.025207e-11	2.612153e-6	2.612153e-7
11	8179762	8099218	NM_020416	PPP2R2C	0.586221	5.025207e-11	2.612153e-6	2.374684e-7
12	8178508	7997746	NM_020655	JPH3	0.581055	8.115755e-11	4.218651e-6	3.515542e-7
13	8179762	8090070	NM_183357	ADCY5	0.581038	8.128250e-11	4.225146e-6	3.250112e-7
14	8124942	8090070	NM_183357	ADCY5	0.581038	8.128250e-11	4.225146e-6	3.017961e-7
15	8124942	7924342	NM_018713	SLC30A10	0.580558	8.495178e-11	4.415878e-6	2.943919e-7
16	8179762	7924342	NM_018713	SLC30A10	0.580558	8.495178e-11	4.415878e-6	2.759924e-7
17	8179762	8177709	NM_206809	MOG	0.580349	8.659475e-11	4.501282e-6	2.647813e-7
18	8124942	8177709	NM_206809	MOG	0.580349	8.659475e-11	4.501282e-6	2.500712e-7
19	8178508	7995332			0.579799	9.107501e-11	4.734170e-6	2.491668e-7
20	8178508	8001329	NM_004352	CBLN1	0.577996	1.073791e-10	5.581673e-6	2.790837e-7
21	8179762	8080142	ENST00000411318		0.576340	1.247929e-10	6.486862e-6	3.088982e-7
22	8124942	8080142	ENST00000411318		0.576340	1.247929e-10	6.486862e-6	2.948573e-7
23	8178508	8099218	NM_020416	PPP2R2C	0.574018	1.538647e-10	7.998041e-6	3.477409e-7
24	8179762	8033674	NM_024690	MUC16	0.573402	1.626105e-10	8.452657e-6	3.521941e-7
25	8124942	8033674	NM_024690	MUC16	0.573402	1.626105e-10	8.452657e-6	3.381063e-7
26	8178508	8033674	NM_024690	MUC16	0.571566	1.916105e-10	9.960103e-6	3.830809e-7
27	8179762	7999674	NM_022844	MYH11	0.569610	2.279436e-10	1.184874e-5	4.388421e-7
28	8124942	7999674	NM_022844	MYH11	0.569610	2.279436e-10	1.184874e-5	4.231692e-7
29	8178508	8173583	NM_033053	DMRTC1	0.566907	2.892529e-10	1.503565e-5	5.184708e-7
30	8178508	8113981	NM_004199	P4HA2	0.566859	2.904649e-10	1.509866e-5	5.032886e-7
31	8179762	8175434	NM_054021	GPR101	0.566740	2.935156e-10	1.525724e-5	4.921689e-7
32	8124942	8175434	NM_054021	GPR101	0.566740	2.935156e-10	1.525724e-5	4.767887e-7
33	8124942	8166398	NM_206923	YY2	0.564380	3.606808e-10	1.874855e-5	5.681378e-7
34	8179762	8166398	NM_206923	YY2	0.564380	3.606808e-10	1.874855e-5	5.514279e-7
35	8178508	8135990	NM_001458	FLNC	0.564099	3.695899e-10	1.921165e-5	5.489044e-7
36	8124942	7918149			0.563559	3.873560e-10	2.013515e-5	5.593098e-7
37	8179762	7918149			0.563559	3.873560e-10	2.013515e-5	5.441933e-7
38	8124942	7924987	NM_000029	AGT	0.560712	4.952709e-10	2.574468e-5	6.774915e-7
39	8179762	7924987	NM_000029	AGT	0.560712	4.952709e-10	2.574468e-5	6.601200e-7
40	8178508	8082928	NM_001002026	CLDN18	0.559330	5.575422e-10	2.898160e-5	7.245400e-7
41	8179762	7897974	NM_001080830	PRAMEF12	0.558486	5.992297e-10	3.114856e-5	7.597210e-7
42	8124942	7897974	NM_001080830	PRAMEF12	0.558486	5.992297e-10	3.114856e-5	7.416324e-7
43	8124942	7975747	NM_001933	DLST	-0.558354	6.060230e-10	3.150168e-5	7.325973e-7
44	8179762	7975747	NM_001933	DLST	-0.558354	6.060230e-10	3.150168e-5	7.159473e-7
45	8124942	7996819	NM_001793	CDH3	0.557357	6.597157e-10	3.429268e-5	7.620596e-7
46	8179762	7996819	NM_001793	CDH3	0.557357	6.597157e-10	3.429268e-5	7.454931e-7
47	8178508	7927367	NM_001040084	ANXA8	0.556445	7.127580e-10	3.704987e-5	7.882952e-7
48	8124942	8166661	ENST00000327781		0.555801	7.526829e-10	3.912521e-5	8.151086e-7
49	8179762	8166661	ENST00000327781		0.555801	7.526829e-10	3.912521e-5	7.984737e-7
50	8178508	8050007	NM_012293	PXDN	0.555706	7.587744e-10	3.944185e-5	7.888370e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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