[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
3568	8105862	NM_001799	CDK7		cyclin-dependent kinase 7
3569	8177462	NM_001799	CDK7		cyclin-dependent kinase 7

Fetching correlation data, please wait...
Getting list of correlations for id 3568.
Getting list of p-values for id 3568.
1 of 2 done.
Getting list of correlations for id 3569.
Getting list of p-values for id 3569.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.253 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8105862	8177462	NM_001799	CDK7	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8177462	8105862	NM_001799	CDK7	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8177462	7913814	NM_015484	SYF2	0.824577	3.137669e-27	1.087328e-22	3.624426e-23
4	8105862	7913814	NM_015484	SYF2	0.824577	3.137669e-27	1.087328e-22	2.718319e-23
5	8177462	8080923	NM_002802	PSMC1	0.794400	4.892901e-24	1.695586e-19	3.391172e-20
6	8105862	8080923	NM_002802	PSMC1	0.794400	4.892901e-24	1.695586e-19	2.825977e-20
7	8105862	7976189	NM_002802	PSMC1	0.791419	9.461096e-24	3.278648e-19	4.683783e-20
8	8177462	7976189	NM_002802	PSMC1	0.791419	9.461096e-24	3.278648e-19	4.098310e-20
9	8177462	8091048	NR_023350	COPB2	0.775066	2.936622e-22	1.017657e-17	1.130730e-18
10	8105862	8091048	NR_023350	COPB2	0.775066	2.936622e-22	1.017657e-17	1.017657e-18
11	8105862	7977657	NM_031314	HNRNPC	0.766277	1.655397e-21	5.736613e-17	5.215102e-18
12	8177462	7977657	NM_031314	HNRNPC	0.766277	1.655397e-21	5.736613e-17	4.780510e-18
13	8177462	8112439	NM_176816	CCDC125	0.763500	2.814227e-21	9.752421e-17	7.501863e-18
14	8105862	8112439	NM_176816	CCDC125	0.763500	2.814227e-21	9.752421e-17	6.966015e-18
15	8177462	7947015	NM_006292	TSG101	0.761443	4.150215e-21	1.438216e-16	9.588104e-18
16	8105862	7947015	NM_006292	TSG101	0.761443	4.150215e-21	1.438216e-16	8.988847e-18
17	8105862	7957177	NM_014999	RAB21	0.761224	4.324869e-21	1.498740e-16	8.816119e-18
18	8177462	7957177	NM_014999	RAB21	0.761224	4.324869e-21	1.498740e-16	8.326334e-18
19	8177462	8079869	NM_005778	RBM5	0.759711	5.738974e-21	1.988784e-16	1.046728e-17
20	8105862	8079869	NM_005778	RBM5	0.759711	5.738974e-21	1.988784e-16	9.943920e-18
21	8105862	7943162	BC012298	C11orf54	0.759518	5.949741e-21	2.061823e-16	9.818206e-18
22	8177462	7943162	BC012298	C11orf54	0.759518	5.949741e-21	2.061823e-16	9.371924e-18
23	8105862	8168472	NM_000052	ATP7A	0.758752	6.859234e-21	2.376999e-16	1.033478e-17
24	8177462	8168472	NM_000052	ATP7A	0.758752	6.859234e-21	2.376999e-16	9.904163e-18
25	8105862	8084607	NM_021627	SENP2	0.758047	7.815714e-21	2.708458e-16	1.083383e-17
26	8177462	8084607	NM_021627	SENP2	0.758047	7.815714e-21	2.708458e-16	1.041714e-17
27	8177462	7935707	NM_001278	CHUK	0.757392	8.820309e-21	3.056590e-16	1.132070e-17
28	8105862	7935707	NM_001278	CHUK	0.757392	8.820309e-21	3.056590e-16	1.091639e-17
29	8105862	8102006	NM_005908	MANBA	0.757214	9.113826e-21	3.158305e-16	1.089071e-17
30	8177462	8102006	NM_005908	MANBA	0.757214	9.113826e-21	3.158305e-16	1.052768e-17
31	8105862	8018439	NM_005324	H3F3B	0.756296	1.078731e-20	3.738235e-16	1.205882e-17
32	8177462	8018439	NM_005324	H3F3B	0.756296	1.078731e-20	3.738235e-16	1.168199e-17
33	8177462	7978492	NM_015473	HEATR5A	0.755944	1.150672e-20	3.987537e-16	1.208345e-17
34	8105862	7978492	NM_015473	HEATR5A	0.755944	1.150672e-20	3.987537e-16	1.172805e-17
35	8105862	8013431	NM_007202	AKAP10	0.753579	1.769459e-20	6.131882e-16	1.751966e-17
36	8177462	8013431	NM_007202	AKAP10	0.753579	1.769459e-20	6.131882e-16	1.703300e-17
37	8177462	8127637	NM_018247	TMEM30A	0.753426	1.818935e-20	6.303338e-16	1.703605e-17
38	8105862	8127637	NM_018247	TMEM30A	0.753426	1.818935e-20	6.303338e-16	1.658773e-17
39	8177462	7949931	NM_017635	SUV420H1	0.751901	2.394117e-20	8.296574e-16	2.127327e-17
40	8105862	7949931	NM_017635	SUV420H1	0.751901	2.394117e-20	8.296574e-16	2.074143e-17
41	8177462	7932616	NM_005470	ABI1	0.751558	2.545609e-20	8.821553e-16	2.151598e-17
42	8105862	7932616	NM_005470	ABI1	0.751558	2.545609e-20	8.821553e-16	2.100370e-17
43	8177462	8023672	NM_004869	VPS4B	0.750995	2.815812e-20	9.757915e-16	2.269283e-17
44	8105862	8023672	NM_004869	VPS4B	0.750995	2.815812e-20	9.757915e-16	2.217708e-17
45	8105862	7947928	NM_031909	C1QTNF4	-0.750917	2.855381e-20	9.895039e-16	2.198898e-17
46	8177462	7947928	NM_031909	C1QTNF4	-0.750917	2.855381e-20	9.895039e-16	2.151095e-17
47	8105862	8049180	NM_004846	EIF4E2	0.750128	3.286316e-20	1.138840e-15	2.423063e-17
48	8177462	8049180	NM_004846	EIF4E2	0.750128	3.286316e-20	1.138840e-15	2.372583e-17
49	8177462	7979044	NM_020921	NIN	0.749723	3.532095e-20	1.224012e-15	2.497984e-17
50	8105862	7979044	NM_020921	NIN	0.749723	3.532095e-20	1.224012e-15	2.448025e-17

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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