[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1692	7981142	NM_024734	CLMN		calmin (calponin-like, transmembrane)

Fetching correlation data, please wait...
Getting list of correlations for id 1692.
Getting list of p-values for id 1692.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.111 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7981142	8106743	NM_004385	VCAN	0.618066	2.151131e-12	3.727264e-8	3.727264e-8
2	7981142	8072015	NM_005160	ADRBK2	0.583764	6.318431e-11	1.094795e-6	5.473973e-7
3	7981142	7981824	NM_014608	CYFIP1	0.575628	1.330920e-10	2.306085e-6	7.686950e-7
4	7981142	7974314	ENST00000364506		0.554228	8.594377e-10	1.489148e-5	3.722869e-6
5	7981142	8152453	NM_014112	TRPS1	0.551680	1.063883e-9	1.843390e-5	3.686781e-6
6	7981142	8108217	NM_000358	TGFBI	0.550977	1.127987e-9	1.954463e-5	3.257438e-6
7	7981142	8102912	NM_015130	TBC1D9	0.531114	5.586829e-9	9.680299e-5	1.382900e-5
8	7981142	8048411	NM_014640	TTLL4	0.528443	6.873999e-9	1.191058e-4	1.488822e-5
9	7981142	7960794	NM_004244	CD163	0.526979	7.695457e-9	1.333392e-4	1.481546e-5
10	7981142	8076403	NM_000262	NAGA	0.526201	8.169710e-9	1.415566e-4	1.415566e-5
11	7981142	8102720	NM_020337	ANKRD50	0.522807	1.058521e-8	1.834099e-4	1.667363e-5
12	7981142	8139500	NM_022748	TNS3	0.517477	1.580843e-8	2.739126e-4	2.282605e-5
13	7981142	7948364	NM_001039396	MPEG1	0.507923	3.189341e-8	5.526171e-4	4.250901e-5
14	7981142	7981157	NR_026779	C14orf139	0.505078	3.914626e-8	6.782872e-4	4.844909e-5
15	7981142	8108330	NM_016604	KDM3B	0.503694	4.321910e-8	7.488574e-4	4.992383e-5
16	7981142	7936529	NM_001127211	KIAA1598	0.502074	4.850363e-8	8.404225e-4	5.252640e-5
17	7981142	8001818	NM_004614	TK2	0.501546	5.035334e-8	8.724723e-4	5.132190e-5
18	7981142	7933760	NM_005436	CCDC6	0.501490	5.055629e-8	8.759888e-4	4.866605e-5
19	7981142	8069880	NM_003253	TIAM1	0.500971	5.244832e-8	9.087720e-4	4.783010e-5
20	7981142	7948667	NM_001620	AHNAK	0.500514	5.416969e-8	9.385983e-4	4.692991e-5
21	7981142	8074237	NM_017424	CECR1	0.499367	5.873482e-8	1.017698e-3	4.846182e-5
22	7981142	7948455	NM_152852	MS4A6A	0.498178	6.384872e-8	1.106307e-3	5.028667e-5
23	7981142	7983054	NR_027911	CAPN3	0.490606	1.078900e-7	1.869410e-3	8.127869e-5
24	7981142	8145470	NM_001386	DPYSL2	0.489443	1.168187e-7	2.024117e-3	8.433820e-5
25	7981142	7939341	NM_000610	CD44	0.488334	1.259767e-7	2.182799e-3	8.731197e-5
26	7981142	8163452	NM_015258	FKBP15	0.487931	1.294735e-7	2.243388e-3	8.628415e-5
27	7981142	8012961	NM_006311	NCOR1	0.487482	1.334725e-7	2.312679e-3	8.565476e-5
28	7981142	8041826	NM_020458	TTC7A	0.487171	1.363188e-7	2.361995e-3	8.435697e-5
29	7981142	8075542	NM_173566	C22orf30	0.485300	1.546695e-7	2.679959e-3	9.241238e-5
30	7981142	7898278	NM_015001	SPEN	0.484841	1.595090e-7	2.763812e-3	9.212707e-5
31	7981142	7915261	NM_017646	TRIT1	0.482676	1.844056e-7	3.195196e-3	1.030708e-4
32	7981142	8030804	NM_001772	CD33	0.479731	2.242540e-7	3.885649e-3	1.214265e-4
33	7981142	7979757	NM_015346	ZFYVE26	0.479625	2.258211e-7	3.912802e-3	1.185698e-4
34	7981142	8063211	NM_181659	NCOA3	0.479091	2.339374e-7	4.053434e-3	1.192186e-4
35	7981142	8131614	NM_001621	AHR	0.475624	2.936841e-7	5.088664e-3	1.453904e-4
36	7981142	7912808	NM_001102663	NBPF16	0.474742	3.110754e-7	5.390003e-3	1.497223e-4
37	7981142	8164105	NM_002077	GOLGA1	0.474487	3.162759e-7	5.480113e-3	1.481112e-4
38	7981142	8003180	NM_001145548	ZDHHC7	0.474046	3.254754e-7	5.639512e-3	1.484082e-4
39	7981142	7898881	NM_003198	TCEB3	0.473933	3.278679e-7	5.680968e-3	1.456658e-4
40	7981142	8053388	NM_006464	TGOLN2	0.472807	3.526725e-7	6.110756e-3	1.527689e-4
41	7981142	7956301	NM_002332	LRP1	0.472387	3.623849e-7	6.279043e-3	1.531474e-4
42	7981142	7990231	NR_023318	ADPGK	0.472186	3.671259e-7	6.361190e-3	1.514569e-4
43	7981142	7919271	NM_183372	NBPF11	0.471425	3.855695e-7	6.680762e-3	1.553666e-4
44	7981142	7919351	NM_183372	NBPF11	0.470704	4.038771e-7	6.997978e-3	1.590450e-4
45	7981142	7927425	NM_020945	WDFY4	0.470110	4.195717e-7	7.269919e-3	1.615538e-4
46	7981142	7904574	NM_001039703	NBPF10	0.469927	4.245311e-7	7.355850e-3	1.599098e-4
47	7981142	7945182	NM_001642	APLP2	0.468010	4.798329e-7	8.314065e-3	1.768950e-4
48	7981142	8146285	NM_152419	HGSNAT	0.467690	4.897357e-7	8.485650e-3	1.767844e-4
49	7981142	8138805	NM_019029	CPVL	0.466703	5.214086e-7	9.034446e-3	1.843765e-4
50	7981142	8106411	NM_130772	S100Z	0.466483	5.287360e-7	9.161409e-3	1.832282e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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