[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1238	7917548	NM_207398	GBP7		guanylate binding protein 7

Fetching correlation data, please wait...
Getting list of correlations for id 1238.
Getting list of p-values for id 1238.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7917548	7917576	NM_052942	GBP5	0.731708	7.609249e-19	1.318455e-14	1.318455e-14
2	7917548	7917516	NM_002053	GBP1	0.712307	1.592836e-17	2.759907e-13	1.379954e-13
3	7917548	8057744	NM_007315	STAT1	0.667429	7.543238e-15	1.307017e-10	4.356723e-11
4	7917548	7948274	NM_004223	UBE2L6	0.654413	3.707732e-14	6.424387e-10	1.606097e-10
5	7917548	7940028	NM_000062	SERPING1	0.649245	6.830090e-14	1.183450e-9	2.366899e-10
6	7917548	7902850	NM_198460	GBP6	0.628028	7.450803e-13	1.291001e-8	2.151668e-9
7	7917548	7971296	NM_001002264	EPSTI1	0.617886	2.191950e-12	3.797993e-8	5.425704e-9
8	7917548	7934898	NM_144590	ANKRD22	0.614418	3.142470e-12	5.444958e-8	6.806197e-9
9	7917548	8084732	NM_022147	RTP4	0.607407	6.422491e-12	1.112825e-7	1.236472e-8
10	7917548	8154233	NM_014143	CD274	0.601884	1.114184e-11	1.930547e-7	1.930547e-8
11	7917548	7917561	NM_052941	GBP4	0.600646	1.258779e-11	2.181086e-7	1.982806e-8
12	7917548	8046124	NM_005771	DHRS9	0.587174	4.595284e-11	7.962249e-7	6.635208e-8
13	7917548	8090018	NM_031458	PARP9	0.584730	5.775633e-11	1.000744e-6	7.698030e-8
14	7917548	7905060	NM_000566	FCGR1A	0.575213	1.381732e-10	2.394127e-6	1.710091e-7
15	7917548	7919133	NM_001017986	FCGR1B	0.568549	2.503414e-10	4.337665e-6	2.891777e-7
16	7917548	8157463	NM_153045	C9orf91	0.566011	3.128712e-10	5.421120e-6	3.388200e-7
17	7917548	7944769	NM_020716	GRAMD1B	0.563141	4.016412e-10	6.959236e-6	4.093668e-7
18	7917548	8004184	NM_017523	XAF1	0.560630	4.987701e-10	8.642189e-6	4.801216e-7
19	7917548	8082100	NM_017554	PARP14	0.557677	6.419849e-10	1.112367e-5	5.854565e-7
20	7917548	7964119	NM_005419	STAT2	0.556296	7.218088e-10	1.250678e-5	6.253391e-7
21	7917548	8094259	NM_015907	LAP3	0.555898	7.465636e-10	1.293571e-5	6.159861e-7
22	7917548	8072710	NM_030641	APOL6	0.553227	9.347936e-10	1.619717e-5	7.362349e-7
23	7917548	7979269	NM_000161	GCH1	0.548280	1.410370e-9	2.443748e-5	1.062499e-6
24	7917548	7905047	NM_000566	FCGR1A	0.547830	1.463625e-9	2.536022e-5	1.056676e-6
25	7917548	8037205	NM_001712	CEACAM1	0.547714	1.477752e-9	2.560501e-5	1.024200e-6
26	7917548	8007446	NM_005533	IFI35	0.544001	2.002245e-9	3.469289e-5	1.334342e-6
27	7917548	8075720	NM_030882	APOL2	0.540485	2.660555e-9	4.609944e-5	1.707387e-6
28	7917548	7951413	NM_001007232	CARD17	0.539497	2.880060e-9	4.990280e-5	1.782243e-6
29	7917548	8059361	NM_020830	WDFY1	0.538457	3.129892e-9	5.423164e-5	1.870057e-6
30	7917548	8178867	NM_000593	TAP1	0.534028	4.446680e-9	7.704762e-5	2.568254e-6
31	7917548	8125512	NM_000593	TAP1	0.534028	4.446680e-9	7.704762e-5	2.485407e-6
32	7917548	8180061	NM_000593	TAP1	0.534028	4.446680e-9	7.704762e-5	2.407738e-6
33	7917548	7938035	NM_006074	TRIM22	0.524358	9.407035e-9	1.629957e-4	4.939264e-6
34	7917548	8067221	NM_030776	ZBP1	0.524090	9.600745e-9	1.663521e-4	4.892709e-6
35	7917548	7917530	AL832451		0.522960	1.046313e-8	1.812946e-4	5.179845e-6
36	7917548	8010426	NM_020954	RNF213	0.518448	1.470167e-8	2.547358e-4	7.075994e-6
37	7917548	8010454	NM_020914	RNF213	0.518330	1.483259e-8	2.570044e-4	6.946064e-6
38	7917548	7921434	NM_004833	AIM2	0.516491	1.701252e-8	2.947759e-4	7.757262e-6
39	7917548	7973618	NM_006084	IRF9	0.516035	1.759875e-8	3.049335e-4	7.818809e-6
40	7917548	7935337	NM_152309	PIK3AP1	0.515601	1.817529e-8	3.149232e-4	7.873079e-6
41	7917548	8040080	NM_080657	RSAD2	0.515194	1.873092e-8	3.245506e-4	7.915870e-6
42	7917548	8023043	NM_024430	PSTPIP2	0.514614	1.955227e-8	3.387822e-4	8.066243e-6
43	7917548	8072735	NM_145343	APOL1	0.512716	2.248742e-8	3.896396e-4	9.061385e-6
44	7917548	7929052	NM_001031683	IFIT3	0.509853	2.772599e-8	4.804082e-4	1.091837e-5
45	7917548	8140971	NM_152703	SAMD9L	0.509328	2.880499e-8	4.991041e-4	1.109120e-5
46	7917548	7917532	NM_004120	GBP2	0.507428	3.305585e-8	5.727587e-4	1.245128e-5
47	7917548	8082075	NM_138287	DTX3L	0.504547	4.066538e-8	7.046090e-4	1.499168e-5
48	7917548	7958828	NM_001143906	TRAFD1	0.503508	4.379816e-8	7.588907e-4	1.581022e-5
49	7917548	7939150	NM_024081	PRRG4	0.498760	6.129544e-8	1.062066e-3	2.167482e-5
50	7917548	8161964	NM_174938	FRMD3	0.497881	6.519176e-8	1.129578e-3	2.259155e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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