[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6120	8027002	NM_004864	GDF15		growth differentiation factor 15

Fetching correlation data, please wait...
Getting list of correlations for id 6120.
Getting list of p-values for id 6120.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8027002	8131056	NM_017781	CYP2W1	0.780084	1.055983e-22	1.829702e-18	1.829702e-18
2	8027002	8036883	NM_144685	HIPK4	0.765291	2.000374e-21	3.466047e-17	1.733024e-17
3	8027002	7935983	NM_005029	PITX3	0.751860	2.411621e-20	4.178615e-16	1.392872e-16
4	8027002	7897066	NR_024445	LOC100128003	0.749507	3.669865e-20	6.358775e-16	1.589694e-16
5	8027002	7986960	NM_015307	FAM189A1	0.745943	6.870607e-20	1.190470e-15	2.380940e-16
6	8027002	7903632	NM_001408	CELSR2	0.745861	6.970686e-20	1.207811e-15	2.013018e-16
7	8027002	7997801	NM_013278	IL17C	0.743384	1.071091e-19	1.855880e-15	2.651257e-16
8	8027002	7970241	NM_000504	F10	0.742828	1.178795e-19	2.042498e-15	2.553123e-16
9	8027002	7909064	NM_005076	CNTN2	0.741382	1.510230e-19	2.616775e-15	2.907528e-16
10	8027002	8062948	NM_014276	RBPJL	0.737268	3.030204e-19	5.250435e-15	5.250435e-16
11	8027002	8005328	NM_016239	MYO15A	0.736843	3.253824e-19	5.637902e-15	5.125365e-16
12	8027002	8010030	NM_003857	GALR2	0.736090	3.689909e-19	6.393506e-15	5.327922e-16
13	8027002	8087907	NM_020163	SEMA3G	0.736082	3.695322e-19	6.402885e-15	4.925296e-16
14	8027002	8067602	NM_152864	NKAIN4	0.734317	4.954332e-19	8.584371e-15	6.131693e-16
15	8027002	8156415	NM_006648	WNK2	0.733169	5.987221e-19	1.037406e-14	6.916039e-16
16	8027002	8163599	NM_015404	DFNB31	0.732033	7.215662e-19	1.250258e-14	7.814111e-16
17	8027002	8064059	NM_020882	COL20A1	0.731470	7.911524e-19	1.370830e-14	8.063705e-16
18	8027002	8137151	NM_198455	SSPO	0.731224	8.235008e-19	1.426880e-14	7.927110e-16
19	8027002	7927367	NM_001040084	ANXA8	0.731104	8.398229e-19	1.455161e-14	7.658743e-16
20	8027002	7945688	NR_003512	INS-IGF2	0.729880	1.024851e-18	1.775760e-14	8.878801e-16
21	8027002	7929932	NM_030929	KAZALD1	0.728128	1.360251e-18	2.356906e-14	1.122336e-15
22	8027002	8013606	NM_000638	VTN	0.727824	1.428372e-18	2.474941e-14	1.124973e-15
23	8027002	8151609	NM_172239	REXO1L1	0.727534	1.496562e-18	2.593093e-14	1.127432e-15
24	8027002	8110688	NM_004174	SLC9A3	0.725183	2.178265e-18	3.774279e-14	1.572616e-15
25	8027002	8153876	NM_025251	ARHGAP39	0.724150	2.566013e-18	4.446130e-14	1.778452e-15
26	8027002	7911435	NM_001014980	FAM132A	0.724087	2.591638e-18	4.490532e-14	1.727128e-15
27	8027002	7945162	NM_003658	BARX2	0.723696	2.756663e-18	4.776471e-14	1.769063e-15
28	8027002	8032699	NM_015174	ZFR2	0.723656	2.774203e-18	4.806861e-14	1.716736e-15
29	8027002	8001449	NM_024336	IRX3	0.723385	2.895277e-18	5.016647e-14	1.729878e-15
30	8027002	7937560	NM_002457	MUC2	0.723062	3.046667e-18	5.278960e-14	1.759653e-15
31	8027002	7952227	NM_015645	C1QTNF5	0.722914	3.118059e-18	5.402660e-14	1.742794e-15
32	8027002	7908812	NM_004767	GPR37L1	0.722557	3.298440e-18	5.715207e-14	1.786002e-15
33	8027002	7913450	NM_005529	HSPG2	0.722205	3.485569e-18	6.039446e-14	1.830135e-15
34	8027002	7942123	NM_053056	CCND1	0.721977	3.612094e-18	6.258676e-14	1.840787e-15
35	8027002	7998910	NM_001103175	CCDC64B	0.720963	4.232538e-18	7.333719e-14	2.095348e-15
36	8027002	7912004	NM_207370	GPR153	0.720857	4.303194e-18	7.456144e-14	2.071151e-15
37	8027002	8074131	NM_001080420	SHANK3	0.720618	4.466989e-18	7.739953e-14	2.091879e-15
38	8027002	8038150	NM_182574	MAMSTR	0.720604	4.476363e-18	7.756194e-14	2.041104e-15
39	8027002	8036072	NM_207392	KRTDAP	0.719925	4.974604e-18	8.619496e-14	2.210127e-15
40	8027002	7928126	NM_014431	KIAA1274	0.719855	5.029097e-18	8.713917e-14	2.178479e-15
41	8027002	7998351	NM_001025190	MSLNL	0.719515	5.301436e-18	9.185797e-14	2.240438e-15
42	8027002	7998015	NM_032451	SPIRE2	0.718015	6.684158e-18	1.158164e-13	2.757533e-15
43	8027002	7991939	NM_145294	WDR90	0.717896	6.808001e-18	1.179622e-13	2.743308e-15
44	8027002	7936762	NM_001001976	ATE1	-0.717487	7.249519e-18	1.256124e-13	2.854828e-15
45	8027002	8033487	NM_032447	FBN3	0.717411	7.334784e-18	1.270898e-13	2.824218e-15
46	8027002	7995193	NM_024742	ARMC5	0.717274	7.491417e-18	1.298038e-13	2.821821e-15
47	8027002	7927307	NM_001630	ANXA8L2	0.716320	8.670151e-18	1.502277e-13	3.196334e-15
48	8027002	7977432	NM_025268	TMEM121	0.715953	9.169790e-18	1.588849e-13	3.310103e-15
49	8027002	8027920	NM_014209	ETV2	0.714402	1.160975e-17	2.011621e-13	4.105348e-15
50	8027002	8060604	NM_000915	OXT	0.714358	1.168729e-17	2.025057e-13	4.050114e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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