[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6674	7933366	NM_016204	GDF2		growth differentiation factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 6674.
Getting list of p-values for id 6674.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.119 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7933366	8049598	NM_194312	ESPNL	0.764986	2.120343e-21	3.673918e-17	3.673918e-17
2	7933366	8024373	NM_001039846	IZUMO4	0.753750	1.715233e-20	2.971984e-16	1.485992e-16
3	7933366	8098848	NM_213613	SLC26A1	0.749199	3.876209e-20	6.716307e-16	2.238769e-16
4	7933366	8049670	NM_002081	GPC1	0.746623	6.101202e-20	1.057155e-15	2.642888e-16
5	7933366	8134827	NM_173564	C7orf51	0.745943	6.871503e-20	1.190625e-15	2.381251e-16
6	7933366	8070771	NM_198691	KRTAP10-1	0.745832	7.005878e-20	1.213908e-15	2.023181e-16
7	7933366	8131056	NM_017781	CYP2W1	0.744627	8.639020e-20	1.496883e-15	2.138404e-16
8	7933366	8016646	NM_000088	COL1A1	0.744400	8.985492e-20	1.556916e-15	1.946145e-16
9	7933366	8060126	NM_198998	AQP12A	0.743127	1.119669e-19	1.940051e-15	2.155613e-16
10	7933366	8039362	NM_178837	C19orf51	0.742273	1.296726e-19	2.246838e-15	2.246838e-16
11	7933366	8004400	NM_175734	C17orf74	0.741053	1.597669e-19	2.768280e-15	2.516619e-16
12	7933366	8004428	NM_001102614	AMAC1L3	0.738931	2.290561e-19	3.968856e-15	3.307380e-16
13	7933366	8015206	NM_001123387	KRTAP2-1	0.736514	3.437869e-19	5.956795e-15	4.582150e-16
14	7933366	8078600	NM_006756	TCEA1	-0.734596	4.730406e-19	8.196374e-15	5.854553e-16
15	7933366	8015208	NM_001123387	KRTAP2-1	0.732177	7.047331e-19	1.221091e-14	8.140607e-16
16	7933366	7914361	NM_001856	COL16A1	0.731096	8.409456e-19	1.457106e-14	9.106916e-16
17	7933366	7970033	NM_001846	COL4A2	0.730804	8.819199e-19	1.528103e-14	8.988839e-16
18	7933366	8070780	NM_198696	KRTAP10-3	0.728415	1.298666e-18	2.250198e-14	1.250110e-15
19	7933366	8026265	NM_080864	RLN3	0.728058	1.375488e-18	2.383307e-14	1.254372e-15
20	7933366	8071444	NM_144704	AIFM3	0.727149	1.591846e-18	2.758192e-14	1.379096e-15
21	7933366	8049536	NM_001137550	LRRFIP1	0.726655	1.722893e-18	2.985257e-14	1.421551e-15
22	7933366	7915385	NM_001956	EDN2	0.726527	1.758335e-18	3.046666e-14	1.384848e-15
23	7933366	7929932	NM_030929	KAZALD1	0.724778	2.323032e-18	4.025117e-14	1.750051e-15
24	7933366	8060604	NM_000915	OXT	0.724297	2.507081e-18	4.344019e-14	1.810008e-15
25	7933366	7968199	NM_001260	CDK8	-0.724084	2.592747e-18	4.492453e-14	1.796981e-15
26	7933366	8178322	NM_006937	SUMO2	-0.722791	3.179209e-18	5.508616e-14	2.118698e-15
27	7933366	8036252	NM_015526	CLIP3	0.722694	3.227826e-18	5.592854e-14	2.071427e-15
28	7933366	8071554	NM_152612	CCDC116	0.720299	4.694146e-18	8.133546e-14	2.904838e-15
29	7933366	7985030	ENST00000428357		0.719948	4.957546e-18	8.589940e-14	2.962048e-15
30	7933366	8032051	NM_182577	ODF3L2	0.719603	5.230039e-18	9.062089e-14	3.020696e-15
31	7933366	8013259	ENST00000300983		0.719254	5.520165e-18	9.564791e-14	3.085416e-15
32	7933366	7931500	NM_001083909	GPR123	0.719106	5.648339e-18	9.786878e-14	3.058399e-15
33	7933366	8143296	NM_198508	KLRG2	0.719084	5.667957e-18	9.820869e-14	2.976021e-15
34	7933366	8037732	NM_001029861	NANOS2	0.718784	5.936901e-18	1.028687e-13	3.025549e-15
35	7933366	8148591	NM_178172	GPIHBP1	0.717997	6.703326e-18	1.161485e-13	3.318529e-15
36	7933366	8020162	NM_054028	AMAC1L2	0.716342	8.640397e-18	1.497122e-13	4.158671e-15
37	7933366	8109697	NM_004060	CCNG1	-0.716280	8.723224e-18	1.511473e-13	4.085062e-15
38	7933366	7929947	NM_005521	TLX1	0.716020	9.076645e-18	1.572710e-13	4.138711e-15
39	7933366	8101000	ENST00000437185		0.715771	9.427485e-18	1.633500e-13	4.188462e-15
40	7933366	8032312	NM_138813	ATP8B3	0.715357	1.004225e-17	1.740020e-13	4.350050e-15
41	7933366	7898556	NM_001040125	PQLC2	0.715245	1.021449e-17	1.769865e-13	4.316744e-15
42	7933366	8040142	NM_016207	CPSF3	-0.714917	1.073772e-17	1.860525e-13	4.429822e-15
43	7933366	7940884	NM_032344	NUDT22	0.714873	1.080960e-17	1.872979e-13	4.355766e-15
44	7933366	8036676	NM_024907	FBXO17	0.714367	1.167228e-17	2.022457e-13	4.596492e-15
45	7933366	8089034	NM_031905	ARMC10	-0.714183	1.200195e-17	2.079578e-13	4.621284e-15
46	7933366	7927367	NM_001040084	ANXA8	0.713686	1.293972e-17	2.242065e-13	4.874054e-15
47	7933366	8079167	NM_001145030	C3orf77	0.713236	1.384910e-17	2.399634e-13	5.105605e-15
48	7933366	8008544	NM_032559	KIF2B	0.710587	2.060802e-17	3.570751e-13	7.439065e-15
49	7933366	7915995	NM_007051	FAF1	-0.709237	2.519366e-17	4.365306e-13	8.908788e-15
50	7933366	8019574	NM_033184	KRTAP2-4	0.708661	2.743550e-17	4.753749e-13	9.507498e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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