[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
5684	8071809	NM_000854	GSTT2		glutathione S-transferase theta 2
5685	8074962	NM_000854	GSTT2		glutathione S-transferase theta 2

Fetching correlation data, please wait...
Getting list of correlations for id 5684.
Getting list of p-values for id 5684.
1 of 2 done.
Getting list of correlations for id 5685.
Getting list of p-values for id 5685.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.194 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8071809	8074962	NM_000854	GSTT2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8074962	8071809	NM_000854	GSTT2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8071809	8047641	NM_177538	CYP20A1	-0.745365	7.599854e-20	2.633653e-15	8.778845e-16
4	8074962	8047641	NM_177538	CYP20A1	-0.745365	7.599854e-20	2.633653e-15	6.584134e-16
5	8074962	8101324	NM_031370	HNRNPD	-0.715839	9.330816e-18	3.233501e-13	6.467002e-14
6	8071809	8101324	NM_031370	HNRNPD	-0.715839	9.330816e-18	3.233501e-13	5.389168e-14
7	8071809	8114455	NM_004134	HSPA9	-0.710922	1.960130e-17	6.792636e-13	9.703766e-14
8	8074962	8114455	NM_004134	HSPA9	-0.710922	1.960130e-17	6.792636e-13	8.490795e-14
9	8074962	8001666	NM_001896	CSNK2A2	-0.708184	2.944090e-17	1.020245e-12	1.133606e-13
10	8071809	8001666	NM_001896	CSNK2A2	-0.708184	2.944090e-17	1.020245e-12	1.020245e-13
11	8071809	8170562	NM_175742	MAGEA2	0.704708	4.901453e-17	1.698550e-12	1.544136e-13
12	8074962	8170562	NM_175742	MAGEA2	0.704708	4.901453e-17	1.698550e-12	1.415458e-13
13	8071809	8110821	NM_001044	SLC6A3	0.702459	6.788946e-17	2.352641e-12	1.809724e-13
14	8074962	8110821	NM_001044	SLC6A3	0.702459	6.788946e-17	2.352641e-12	1.680458e-13
15	8074962	8167652	AY730278	CENPVL1	0.700173	9.425579e-17	3.266340e-12	2.177560e-13
16	8071809	8167652	AY730278	CENPVL1	0.700173	9.425579e-17	3.266340e-12	2.041463e-13
17	8071809	8172715	AY730278	CENPVL1	0.700173	9.425579e-17	3.266340e-12	1.921376e-13
18	8074962	8172715	AY730278	CENPVL1	0.700173	9.425579e-17	3.266340e-12	1.814633e-13
19	8071809	7947744	NM_002334	LRP4	0.699985	9.682304e-17	3.355306e-12	1.765950e-13
20	8074962	7947744	NM_002334	LRP4	0.699985	9.682304e-17	3.355306e-12	1.677653e-13
21	8074962	8110783	NM_198253	TERT	0.699015	1.111688e-16	3.852445e-12	1.834498e-13
22	8071809	8110783	NM_198253	TERT	0.699015	1.111688e-16	3.852445e-12	1.751111e-13
23	8074962	8008201	NM_002507	NGFR	0.698592	1.180519e-16	4.090970e-12	1.778683e-13
24	8071809	8008201	NM_002507	NGFR	0.698592	1.180519e-16	4.090970e-12	1.704571e-13
25	8074962	8006392	NM_002815	PSMD11	-0.698196	1.248615e-16	4.326949e-12	1.730780e-13
26	8071809	8006392	NM_002815	PSMD11	-0.698196	1.248615e-16	4.326949e-12	1.664211e-13
27	8071809	8042335	NM_003375	VDAC2	-0.697245	1.428525e-16	4.950411e-12	1.833486e-13
28	8074962	8042335	NM_003375	VDAC2	-0.697245	1.428525e-16	4.950411e-12	1.768004e-13
29	8071809	8036270	NM_152658	THAP8	0.696894	1.500895e-16	5.201203e-12	1.793518e-13
30	8074962	8036270	NM_152658	THAP8	0.696894	1.500895e-16	5.201203e-12	1.733734e-13
31	8074962	8075211	NM_001007279	RASL10A	0.694758	2.025453e-16	7.019004e-12	2.264195e-13
32	8071809	8075211	NM_001007279	RASL10A	0.694758	2.025453e-16	7.019004e-12	2.193439e-13
33	8074962	7913450	NM_005529	HSPG2	0.694618	2.065637e-16	7.158257e-12	2.169169e-13
34	8071809	7913450	NM_005529	HSPG2	0.694618	2.065637e-16	7.158257e-12	2.105370e-13
35	8071809	7915404	NM_033553	GUCA2A	0.693443	2.432897e-16	8.430962e-12	2.408846e-13
36	8074962	7915404	NM_033553	GUCA2A	0.693443	2.432897e-16	8.430962e-12	2.341934e-13
37	8074962	8049598	NM_194312	ESPNL	0.691762	3.070435e-16	1.064029e-11	2.875753e-13
38	8071809	8049598	NM_194312	ESPNL	0.691762	3.070435e-16	1.064029e-11	2.800075e-13
39	8071809	8073799	NM_013236	ATXN10	-0.691062	3.381558e-16	1.171845e-11	3.004731e-13
40	8074962	8073799	NM_013236	ATXN10	-0.691062	3.381558e-16	1.171845e-11	2.929613e-13
41	8074962	7929840	NM_003987	PAX2	0.690945	3.436648e-16	1.190936e-11	2.904722e-13
42	8071809	7929840	NM_003987	PAX2	0.690945	3.436648e-16	1.190936e-11	2.835562e-13
43	8074962	7995421	NM_031490	LONP2	-0.690793	3.509216e-16	1.216084e-11	2.828102e-13
44	8071809	7995421	NM_031490	LONP2	-0.690793	3.509216e-16	1.216084e-11	2.763827e-13
45	8074962	8131098	ENST00000402221		0.690446	3.680523e-16	1.275448e-11	2.834330e-13
46	8071809	8131098	ENST00000402221		0.690446	3.680523e-16	1.275448e-11	2.772714e-13
47	8074962	8074131	NM_001080420	SHANK3	0.690409	3.699164e-16	1.281908e-11	2.727464e-13
48	8071809	8074131	NM_001080420	SHANK3	0.690409	3.699164e-16	1.281908e-11	2.670642e-13
49	8071809	8049509	NM_015893	PRLH	0.690374	3.716995e-16	1.288087e-11	2.628750e-13
50	8074962	8049509	NM_015893	PRLH	0.690374	3.716995e-16	1.288087e-11	2.576175e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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