[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
12392	8165752	NM_002183	IL3RA		interleukin 3 receptor, alpha (low affinity)
12393	8176323	NM_002183	IL3RA		interleukin 3 receptor, alpha (low affinity)

Fetching correlation data, please wait...
Getting list of correlations for id 12392.
Getting list of p-values for id 12392.
1 of 2 done.
Getting list of correlations for id 12393.
Getting list of p-values for id 12393.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.159 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8176323	8165752	NM_002183	IL3RA	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8165752	8176323	NM_002183	IL3RA	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8176323	8029056	NM_001042595	TMEM91	0.503536	4.371023e-8	1.514734e-3	5.049114e-4
4	8165752	8029056	NM_001042595	TMEM91	0.503536	4.371023e-8	1.514734e-3	3.786836e-4
5	8176323	8126371	NM_001760	CCND3	0.484709	1.609313e-7	5.576914e-3	1.115383e-3
6	8165752	8126371	NM_001760	CCND3	0.484709	1.609313e-7	5.576914e-3	9.294857e-4
7	8165752	8061966	NM_016732	RALY	0.463952	6.203624e-7	2.149804e-2	3.071149e-3
8	8176323	8061966	NM_016732	RALY	0.463952	6.203624e-7	2.149804e-2	2.687255e-3
9	8165752	8086201	NM_001607	ACAA1	0.459009	8.444646e-7	2.926408e-2	3.251564e-3
10	8176323	8086201	NM_001607	ACAA1	0.459009	8.444646e-7	2.926408e-2	2.926408e-3
11	8176323	8174361	NM_198057	TSC22D3	0.449612	1.497989e-6	5.191133e-2	4.719212e-3
12	8165752	8174361	NM_198057	TSC22D3	0.449612	1.497989e-6	5.191133e-2	4.325944e-3
13	8165752	8053214	NM_181575	AUP1	0.442424	2.296024e-6	7.956643e-2	6.120495e-3
14	8176323	8053214	NM_181575	AUP1	0.442424	2.296024e-6	7.956643e-2	5.683316e-3
15	8176323	8053158	NM_006302	MOGS	0.438888	2.822565e-6	9.781318e-2	6.520878e-3
16	8165752	8053158	NM_006302	MOGS	0.438888	2.822565e-6	9.781318e-2	6.113324e-3
17	8165752	8119503	NM_138572	TAF8	0.433352	3.882243e-6	1.345352e-1	7.913838e-3
18	8176323	8119503	NM_138572	TAF8	0.433352	3.882243e-6	1.345352e-1	7.474180e-3
19	8176323	8024358	NM_001319	CSNK1G2	0.431768	4.248460e-6	1.472261e-1	7.748744e-3
20	8165752	8024358	NM_001319	CSNK1G2	0.431768	4.248460e-6	1.472261e-1	7.361306e-3
21	8176323	7906443	NM_002001	FCER1A	0.431688	4.267727e-6	1.478938e-1	7.042562e-3
22	8165752	7906443	NM_002001	FCER1A	0.431688	4.267727e-6	1.478938e-1	6.722446e-3
23	8176323	8033300	NM_001080452	GPR108	0.430819	4.483285e-6	1.553638e-1	6.754946e-3
24	8165752	8033300	NM_001080452	GPR108	0.430819	4.483285e-6	1.553638e-1	6.473490e-3
25	8176323	8175900	NM_001666	ARHGAP4	0.430003	4.694883e-6	1.626965e-1	6.507859e-3
26	8165752	8175900	NM_001666	ARHGAP4	0.430003	4.694883e-6	1.626965e-1	6.257557e-3
27	8165752	8031536	NM_007279	U2AF2	0.429634	4.793837e-6	1.661256e-1	6.152801e-3
28	8176323	8031536	NM_007279	U2AF2	0.429634	4.793837e-6	1.661256e-1	5.933058e-3
29	8176323	7938154	NM_004517	ILK	0.428268	5.176645e-6	1.793915e-1	6.185913e-3
30	8165752	7938154	NM_004517	ILK	0.428268	5.176645e-6	1.793915e-1	5.979715e-3
31	8165752	7953395	NM_016319	COPS7A	0.424229	6.485193e-6	2.247379e-1	7.249609e-3
32	8176323	7953395	NM_016319	COPS7A	0.424229	6.485193e-6	2.247379e-1	7.023058e-3
33	8165752	7973584	NM_017999	RNF31	0.422585	7.102225e-6	2.461205e-1	7.458197e-3
34	8176323	7973584	NM_017999	RNF31	0.422585	7.102225e-6	2.461205e-1	7.238838e-3
35	8176323	8110649	NM_033549	TRIM41	0.421469	7.552273e-6	2.617165e-1	7.477614e-3
36	8165752	8110649	NM_033549	TRIM41	0.421469	7.552273e-6	2.617165e-1	7.269902e-3
37	8165752	8013191	NM_002018	FLII	0.421344	7.604119e-6	2.635132e-1	7.121977e-3
38	8176323	8013191	NM_002018	FLII	0.421344	7.604119e-6	2.635132e-1	6.934557e-3
39	8176323	7909285	NM_006212	PFKFB2	0.417520	9.369758e-6	3.246996e-1	8.325631e-3
40	8165752	7909285	NM_006212	PFKFB2	0.417520	9.369758e-6	3.246996e-1	8.117490e-3
41	8176323	7899192	NM_002953	RPS6KA1	0.415988	1.017997e-5	3.527766e-1	8.604307e-3
42	8165752	7899192	NM_002953	RPS6KA1	0.415988	1.017997e-5	3.527766e-1	8.399443e-3
43	8165752	8019772	NM_005782	THOC4	0.415532	1.043367e-5	3.615683e-1	8.408565e-3
44	8176323	8019772	NM_005782	THOC4	0.415532	1.043367e-5	3.615683e-1	8.217461e-3
45	8176323	8030049	NM_017457	CYTH2	0.415430	1.049123e-5	3.635632e-1	8.079182e-3
46	8165752	8030049	NM_017457	CYTH2	0.415430	1.049123e-5	3.635632e-1	7.903548e-3
47	8176323	8110166	NM_138820	HIGD2A	0.413255	1.179135e-5	4.086174e-1	8.693986e-3
48	8165752	8110166	NM_138820	HIGD2A	0.413255	1.179135e-5	4.086174e-1	8.512862e-3
49	8176323	8140386	NM_016086	STYXL1	0.412936	1.199394e-5	4.156381e-1	8.482410e-3
50	8165752	8140386	NM_016086	STYXL1	0.412936	1.199394e-5	4.156381e-1	8.312761e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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