[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1577	8069122	NM_030891	LRRC3		leucine rich repeat containing 3

Fetching correlation data, please wait...
Getting list of correlations for id 1577.
Getting list of p-values for id 1577.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.158 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8069122	7896985	NM_080875	MIB2	0.733946	5.267804e-19	9.127524e-15	9.127524e-15
2	8069122	8036232	NM_001039876	C19orf46	0.717787	6.923109e-18	1.199567e-13	5.997836e-14
3	8069122	8131195	NM_133463	AMZ1	0.716914	7.916555e-18	1.371701e-13	4.572338e-14
4	8069122	8079021	NM_001904	CTNNB1	-0.712807	1.477544e-17	2.560141e-13	6.400353e-14
5	8069122	8133704	NM_001110199	SRRM3	0.710914	1.962676e-17	3.400728e-13	6.801456e-14
6	8069122	8086810	NM_003074	SMARCC1	-0.706287	3.891861e-17	6.743427e-13	1.123905e-13
7	8069122	8032312	NM_138813	ATP8B3	0.704891	4.772267e-17	8.268906e-13	1.181272e-13
8	8069122	8000467	NM_001109763	GSG1L	0.704856	4.796775e-17	8.311372e-13	1.038921e-13
9	8069122	7983663	NM_005154	USP8	-0.703845	5.555573e-17	9.626141e-13	1.069571e-13
10	8069122	8120022	NM_001253	CDC5L	-0.701797	7.468061e-17	1.293991e-12	1.293991e-13
11	8069122	8059028	NM_194302	CCDC108	0.700748	8.681357e-17	1.504219e-12	1.367472e-13
12	8069122	7913450	NM_005529	HSPG2	0.699643	1.016610e-16	1.761479e-12	1.467899e-13
13	8069122	8116033	NM_000505	F12	0.697221	1.433282e-16	2.483448e-12	1.910344e-13
14	8069122	8028407	NM_000540	RYR1	0.696551	1.575290e-16	2.729505e-12	1.949646e-13
15	8069122	7935535	NM_018058	CRTAC1	0.696244	1.644620e-16	2.849633e-12	1.899755e-13
16	8069122	8090639	NM_014602	PIK3R4	-0.695822	1.745248e-16	3.023991e-12	1.889995e-13
17	8069122	7977418	NM_001134875	C14orf80	0.693764	2.326782e-16	4.031615e-12	2.371539e-13
18	8069122	8110522	NM_001746	CANX	-0.692772	2.670381e-16	4.626969e-12	2.570538e-13
19	8069122	8035408	NM_000923	PDE4C	0.692684	2.703051e-16	4.683577e-12	2.465041e-13
20	8069122	7927367	NM_001040084	ANXA8	0.692492	2.775814e-16	4.809653e-12	2.404827e-13
21	8069122	8138450	NM_152898	FERD3L	0.691296	3.274442e-16	5.673626e-12	2.701727e-13
22	8069122	8082928	NM_001002026	CLDN18	0.691179	3.327507e-16	5.765571e-12	2.620714e-13
23	8069122	7952893	BC024764	IQSEC3	0.691042	3.390828e-16	5.875288e-12	2.554473e-13
24	8069122	8082788	NM_001134422	CDV3	-0.688645	4.708934e-16	8.159170e-12	3.399654e-13
25	8069122	8125568	NM_080680	COL11A2	0.688642	4.710881e-16	8.162544e-12	3.265018e-13
26	8069122	8125383	NM_004557	NOTCH4	0.687518	5.488654e-16	9.510191e-12	3.657766e-13
27	8069122	8157818	NM_001045476	WDR38	0.687210	5.722802e-16	9.915900e-12	3.672555e-13
28	8069122	8079305	NM_003278	CLEC3B	0.686677	6.151101e-16	1.065801e-11	3.806433e-13
29	8069122	8153823	NM_032687	CYHR1	0.686490	6.308038e-16	1.092994e-11	3.768944e-13
30	8069122	8099631	ENST00000421246		-0.686424	6.364720e-16	1.102815e-11	3.676050e-13
31	8069122	7922646	NM_022347	TOR1AIP2	-0.684956	7.756858e-16	1.344031e-11	4.335583e-13
32	8069122	7937560	NM_002457	MUC2	0.684606	8.130135e-16	1.408708e-11	4.402214e-13
33	8069122	7946661	NM_015881	DKK3	0.684118	8.678986e-16	1.503808e-11	4.556994e-13
34	8069122	8049919	NM_152783	D2HGDH	0.684066	8.739033e-16	1.514212e-11	4.453565e-13
35	8069122	8137715	NM_182924	MICALL2	0.683900	8.935339e-16	1.548226e-11	4.423504e-13
36	8069122	8066590	NM_003279	TNNC2	0.683750	9.117440e-16	1.579779e-11	4.388275e-13
37	8069122	8141648	NM_015831	ACHE	0.683425	9.521038e-16	1.649710e-11	4.458676e-13
38	8069122	8023990	NM_020637	FGF22	0.683048	1.001307e-15	1.734964e-11	4.565694e-13
39	8069122	7981013	NM_178013	PRIMA1	0.682987	1.009376e-15	1.748945e-11	4.484475e-13
40	8069122	8025321	NR_002931	CLEC4GP1	0.682662	1.054009e-15	1.826281e-11	4.565701e-13
41	8069122	7931439	NM_006426	DPYSL4	0.682454	1.083614e-15	1.877579e-11	4.579460e-13
42	8069122	7933310	ENST00000319426		0.681560	1.220139e-15	2.114136e-11	5.033656e-13
43	8069122	8042119	NM_022894	PAPOLG	-0.680658	1.374723e-15	2.381983e-11	5.539494e-13
44	8069122	8026900	NM_002248	KCNN1	0.679970	1.505439e-15	2.608474e-11	5.928351e-13
45	8069122	8030251	NM_017636	TRPM4	0.679914	1.516532e-15	2.627695e-11	5.839323e-13
46	8069122	7967039	NM_002442	MSI1	0.679855	1.528250e-15	2.647999e-11	5.756519e-13
47	8069122	7900792	NM_002840	PTPRF	0.679566	1.587639e-15	2.750902e-11	5.852983e-13
48	8069122	8104268	NM_001003841	SLC6A19	0.679271	1.650383e-15	2.859618e-11	5.957538e-13
49	8069122	7909642	NM_024749	VASH2	0.678923	1.727387e-15	2.993044e-11	6.108252e-13
50	8069122	7901687	NM_182532	TMEM61	0.678360	1.859690e-15	3.222284e-11	6.444569e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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