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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
3521 7956200 NM_002475 MYL6B link to infopage myosin, light chain 6B, alkali, smooth muscle and non-muscle

Fetching correlation data, please wait...
Getting list of correlations for id 3521.
Getting list of p-values for id 3521.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7956200 8098730 NM_033178 DUX4 link to infopage 0.691812 3.049548e-16 5.283952e-12 5.283952e-12
2 7956200 8098743 NM_033178 DUX4 link to infopage 0.691812 3.049548e-16 5.283952e-12 2.641976e-12
3 7956200 7931662 NM_033178 DUX4 link to infopage 0.684248 8.528983e-16 1.477817e-11 4.926056e-12
4 7956200 7931671 NM_033178 DUX4 link to infopage 0.684248 8.528983e-16 1.477817e-11 3.694542e-12
5 7956200 7931668 NM_033178 DUX4 link to infopage 0.684248 8.528983e-16 1.477817e-11 2.955634e-12
6 7956200 7931659 NM_033178 DUX4 link to infopage 0.684248 8.528983e-16 1.477817e-11 2.463028e-12
7 7956200 7931656 NM_033178 DUX4 link to infopage 0.684248 8.528983e-16 1.477817e-11 2.111167e-12
8 7956200 8157383 NM_032888 COL27A1 link to infopage 0.676050 2.512299e-15 4.353060e-11 5.441325e-12
9 7956200 7931665 NM_033178 DUX4 link to infopage 0.668845 6.312740e-15 1.093809e-10 1.215343e-11
10 7956200 8170695 NM_001395 DUSP9 link to infopage 0.665488 9.612516e-15 1.665561e-10 1.665561e-11
11 7956200 8033825 NM_015719 COL5A3 link to infopage 0.661620 1.550343e-14 2.686280e-10 2.442073e-11
12 7956200 8076732 link to infopage 0.657190 2.657065e-14 4.603896e-10 3.836580e-11
13 7956200 8106923 NM_005654 NR2F1 link to infopage 0.653682 4.045420e-14 7.009499e-10 5.391922e-11
14 7956200 7931348 NM_207426 FOXI2 link to infopage 0.652459 4.677858e-14 8.105324e-10 5.789517e-11
15 7956200 8036479 NM_033557 YIF1B link to infopage 0.648725 7.258949e-14 1.257758e-9 8.385053e-11
16 7956200 8104122 NM_033178 DUX4 link to infopage 0.648008 7.892488e-14 1.367531e-9 8.547071e-11
17 7956200 8098732 NM_033178 DUX4 link to infopage 0.647420 8.451320e-14 1.464360e-9 8.613884e-11
18 7956200 8066590 NM_003279 TNNC2 link to infopage 0.646480 9.425205e-14 1.633105e-9 9.072807e-11
19 7956200 8098740 NM_033178 DUX4 link to infopage 0.646347 9.571419e-14 1.658440e-9 8.728631e-11
20 7956200 8175747 NM_005362 MAGEA3 link to infopage 0.646264 9.664571e-14 1.674580e-9 8.372901e-11
21 7956200 8059014 NM_017521 FEV link to infopage 0.644707 1.156743e-13 2.004288e-9 9.544229e-11
22 7956200 8109612 NM_000679 ADRA1B link to infopage 0.642910 1.421610e-13 2.463224e-9 1.119647e-10
23 7956200 8098725 NM_033178 DUX4 link to infopage 0.642900 1.423294e-13 2.466142e-9 1.072236e-10
24 7956200 8093386 NM_002477 MYL5 link to infopage 0.640978 1.771707e-13 3.069836e-9 1.279098e-10
25 7956200 8170553 NM_175868 MAGEA6 link to infopage 0.640400 1.891789e-13 3.277903e-9 1.311161e-10
26 7956200 7976783 NM_003836 DLK1 link to infopage 0.639438 2.109416e-13 3.654985e-9 1.405764e-10
27 7956200 7939665 NM_001012334 MDK link to infopage 0.638316 2.393686e-13 4.147540e-9 1.536126e-10
28 7956200 8035646 NM_023002 HAPLN4 link to infopage 0.636741 2.856049e-13 4.948676e-9 1.767384e-10
29 7956200 7906205 NM_021948 BCAN link to infopage 0.636487 2.938147e-13 5.090927e-9 1.755492e-10
30 7956200 8016609 NM_005220 DLX3 link to infopage 0.635870 3.147706e-13 5.454030e-9 1.818010e-10
31 7956200 7998374 NM_016541 GNG13 link to infopage 0.634546 3.646764e-13 6.318748e-9 2.038306e-10
32 7956200 8086985 NM_000094 COL7A1 link to infopage 0.634263 3.763020e-13 6.520185e-9 2.037558e-10
33 7956200 8150433 NM_152568 NKX6-3 link to infopage 0.632851 4.398558e-13 7.621381e-9 2.309509e-10
34 7956200 7898377 NM_014675 CROCC link to infopage 0.632581 4.531297e-13 7.851378e-9 2.309229e-10
35 7956200 7914361 NM_001856 COL16A1 link to infopage 0.632504 4.569886e-13 7.918241e-9 2.262355e-10
36 7956200 8095216 NM_020722 KIAA1211 link to infopage 0.630983 5.400834e-13 9.358025e-9 2.599451e-10
37 7956200 7914880 NM_005202 COL8A2 link to infopage 0.629716 6.202477e-13 1.074703e-8 2.904603e-10
38 7956200 8148932 NM_213605 ZNF517 link to infopage 0.629318 6.477315e-13 1.122324e-8 2.953485e-10
39 7956200 8033414 NM_174895 PCP2 link to infopage 0.629209 6.554445e-13 1.135689e-8 2.912022e-10
40 7956200 7949033 NM_014067 MACROD1 link to infopage 0.628328 7.212217e-13 1.249661e-8 3.124152e-10
41 7956200 8051464 NM_019024 HEATR5B link to infopage -0.627711 7.711475e-13 1.336167e-8 3.258945e-10
42 7956200 8156167 NM_024635 NAA35 link to infopage -0.627688 7.730237e-13 1.339418e-8 3.189091e-10
43 7956200 8052798 NM_014911 AAK1 link to infopage -0.626677 8.622508e-13 1.494022e-8 3.474470e-10
44 7956200 8086810 NM_003074 SMARCC1 link to infopage -0.625912 9.362868e-13 1.622304e-8 3.687055e-10
45 7956200 8000222 NM_015092 SMG1 link to infopage -0.624175 1.127882e-12 1.954281e-8 4.342846e-10
46 7956200 7993999 NM_015092 SMG1 link to infopage -0.624175 1.127882e-12 1.954281e-8 4.248436e-10
47 7956200 8035249 NM_005234 NR2F6 link to infopage 0.623849 1.167824e-12 2.023488e-8 4.305294e-10
48 7956200 7897132 NM_022114 PRDM16 link to infopage 0.621105 1.562945e-12 2.708115e-8 5.641905e-10
49 7956200 7998724 NM_020764 CASKIN1 link to infopage 0.621098 1.564079e-12 2.710079e-8 5.530774e-10
50 7956200 7992197 ENST00000429194 link to infopage 0.620584 1.651332e-12 2.861263e-8 5.722526e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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