[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1620	8166266	NM_198270	NHS		Nance-Horan syndrome (congenital cataracts and dental anomalies)

Fetching correlation data, please wait...
Getting list of correlations for id 1620.
Getting list of p-values for id 1620.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.132 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8166266	8009951	NM_000213	ITGB4	0.657533	2.549286e-14	4.417147e-10	4.417147e-10
2	8166266	7989365	NM_134260	RORA	-0.652303	4.765207e-14	8.256673e-10	4.128337e-10
3	8166266	8151644	NM_016033	FAM82B	-0.647579	8.296098e-14	1.437465e-9	4.791550e-10
4	8166266	8058614	NM_006055	LANCL1	-0.647018	8.855654e-14	1.534419e-9	3.836048e-10
5	8166266	7964535	NM_000785	CYP27B1	0.638477	2.350711e-13	4.073077e-9	8.146154e-10
6	8166266	8140403	NM_080744	SRCRB4D	0.637723	2.558404e-13	4.432947e-9	7.388246e-10
7	8166266	8010287	NM_030968	C1QTNF1	0.633451	4.116861e-13	7.133285e-9	1.019041e-9
8	8166266	8041360	NM_017735	TTC27	-0.633429	4.126517e-13	7.150016e-9	8.937520e-10
9	8166266	8153704	NM_031309	SCRT1	0.630574	5.647723e-13	9.785810e-9	1.087312e-9
10	8166266	7980152	NM_000428	LTBP2	0.628219	7.298480e-13	1.264608e-8	1.264608e-9
11	8166266	7960716	NM_001144831	PHB2	-0.627269	8.088389e-13	1.401475e-8	1.274068e-9
12	8166266	8094093	NM_080819	GPR78	0.627093	8.244061e-13	1.428448e-8	1.190374e-9
13	8166266	7984408	NM_145160	MAP2K5	-0.624917	1.041729e-12	1.805003e-8	1.388464e-9
14	8166266	8156415	NM_006648	WNK2	0.623830	1.170122e-12	2.027470e-8	1.448193e-9
15	8166266	8044473	NM_019014	POLR1B	-0.622148	1.399469e-12	2.424859e-8	1.616573e-9
16	8166266	7987405	NM_005739	RASGRP1	-0.621022	1.576736e-12	2.732010e-8	1.707506e-9
17	8166266	8015554	NM_012285	KCNH4	0.620978	1.584083e-12	2.744741e-8	1.614554e-9
18	8166266	7909104	NM_212503	CDK18	0.620742	1.623979e-12	2.813869e-8	1.563260e-9
19	8166266	8178442	NM_001264	CDSN	0.619772	1.798719e-12	3.116641e-8	1.640337e-9
20	8166266	8014269	NM_139285	GAS2L2	0.619594	1.832792e-12	3.175679e-8	1.587839e-9
21	8166266	7998494	NM_001143980	CCDC154	0.618918	1.967667e-12	3.409377e-8	1.623513e-9
22	8166266	8159549	NM_004479	FUT7	0.618638	2.026115e-12	3.510650e-8	1.595750e-9
23	8166266	8124862	NM_001264	CDSN	0.618219	2.117068e-12	3.668243e-8	1.594888e-9
24	8166266	7953303	NM_018173	PLEKHG6	0.617902	2.188305e-12	3.791675e-8	1.579865e-9
25	8166266	7960397	NM_020638	FGF23	0.617086	2.382846e-12	4.128757e-8	1.651503e-9
26	8166266	8090639	NM_014602	PIK3R4	-0.616874	2.436081e-12	4.220997e-8	1.623460e-9
27	8166266	7994675	NM_181718	ASPHD1	0.616816	2.450827e-12	4.246549e-8	1.572796e-9
28	8166266	8136401	NM_015135	NUP205	-0.616500	2.532765e-12	4.388521e-8	1.567329e-9
29	8166266	7912224	NM_003039	SLC2A5	0.616009	2.665400e-12	4.618339e-8	1.592531e-9
30	8166266	8077688	NM_153461	IL17RC	0.615896	2.696820e-12	4.672781e-8	1.557594e-9
31	8166266	8077192	NM_000482	APOA4	0.614993	2.961205e-12	5.130880e-8	1.655123e-9
32	8166266	8117739	ENST00000451041		0.614649	3.068254e-12	5.316364e-8	1.661364e-9
33	8166266	8179716	NM_001264	CDSN	0.613660	3.397946e-12	5.887621e-8	1.784128e-9
34	8166266	7931417	NM_001105521	JAKMIP3	0.613090	3.602811e-12	6.242590e-8	1.836056e-9
35	8166266	7929674	BC037252	C10orf62	0.612932	3.661917e-12	6.345003e-8	1.812858e-9
36	8166266	7950701	NM_001098816	ODZ4	0.612106	3.985554e-12	6.905770e-8	1.918269e-9
37	8166266	8062064	NM_020884	MYH7B	0.611937	4.054832e-12	7.025807e-8	1.898867e-9
38	8166266	8131539	NM_018374	TMEM106B	-0.611793	4.115189e-12	7.130389e-8	1.876418e-9
39	8166266	7935983	NM_005029	PITX3	0.610929	4.494583e-12	7.787764e-8	1.996862e-9
40	8166266	7921936	NM_177398	LMX1A	0.610856	4.528412e-12	7.846380e-8	1.961595e-9
41	8166266	7946275	NR_003945	GVIN1	-0.610609	4.643620e-12	8.046000e-8	1.962439e-9
42	8166266	8105545	NM_016338	IPO11	-0.610394	4.746676e-12	8.224566e-8	1.958230e-9
43	8166266	8064111	NM_032957	RTEL1	0.609968	4.956663e-12	8.588410e-8	1.997305e-9
44	8166266	8083887	NM_005602	CLDN11	0.609673	5.107486e-12	8.849740e-8	2.011305e-9
45	8166266	8086985	NM_000094	COL7A1	0.609307	5.300503e-12	9.184181e-8	2.040929e-9
46	8166266	8008228	NM_138281	DLX4	0.609041	5.445445e-12	9.435323e-8	2.051157e-9
47	8166266	8159624	BC052297	C9orf169	0.609009	5.463167e-12	9.466029e-8	2.014049e-9
48	8166266	8149652	NM_005144	HR	0.608579	5.706031e-12	9.886841e-8	2.059758e-9
49	8166266	7898616	NM_022819	PLA2G2F	0.607388	6.434437e-12	1.114895e-7	2.275296e-9
50	8166266	8153101	NM_152888	COL22A1	0.606072	7.344520e-12	1.272585e-7	2.545170e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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