[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2477	8077635	NM_016819	OGG1		8-oxoguanine DNA glycosylase

Fetching correlation data, please wait...
Getting list of correlations for id 2477.
Getting list of p-values for id 2477.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.094 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8077635	8137225	NM_013400	REPIN1	0.553050	9.487757e-10	1.643944e-5	1.643944e-5
2	8077635	7999160	NM_013399	C16orf5	0.550791	1.145618e-9	1.985012e-5	9.925059e-6
3	8077635	8155062	NM_006285	TESK1	0.544821	1.872892e-9	3.245160e-5	1.081720e-5
4	8077635	8000948	NM_004765	BCL7C	0.526640	7.899093e-9	1.368676e-4	3.421690e-5
5	8077635	7943853	NM_003002	SDHD	0.512067	2.358484e-8	4.086545e-4	8.173090e-5
6	8077635	8094968	NM_175619	ZAR1	0.498442	6.267735e-8	1.086010e-3	1.810017e-4
7	8077635	8098916	NM_001127266	TMEM129	0.494553	8.221080e-8	1.424466e-3	2.034952e-4
8	8077635	8044682	ENST00000272567		0.491478	1.016340e-7	1.761013e-3	2.201266e-4
9	8077635	7968252			0.491443	1.018797e-7	1.765269e-3	1.961410e-4
10	8077635	7998634	NM_001009606	HS3ST6	0.491209	1.035272e-7	1.793816e-3	1.793816e-4
11	8077635	8126646	NM_018135	MRPS18A	0.490612	1.078465e-7	1.868656e-3	1.698778e-4
12	8077635	8032365	NM_031918	KLF16	0.489682	1.149289e-7	1.991374e-3	1.659478e-4
13	8077635	8060370	NM_031424	FAM110A	0.486585	1.418282e-7	2.457456e-3	1.890351e-4
14	8077635	8074082	NM_152299	NCAPH2	0.485460	1.530107e-7	2.651216e-3	1.893726e-4
15	8077635	8072328	NM_012429	SEC14L2	0.483999	1.687819e-7	2.924483e-3	1.949655e-4
16	8077635	7999754	NM_022166	XYLT1	0.479211	2.320784e-7	4.021222e-3	2.513264e-4
17	8077635	7959123	NM_006253	PRKAB1	0.478564	2.421944e-7	4.196503e-3	2.468531e-4
18	8077635	8066195	NM_006698	BLCAP	0.477781	2.550102e-7	4.418561e-3	2.454756e-4
19	8077635	7984011	NM_012182	FOXB1	0.475729	2.916935e-7	5.054173e-3	2.660091e-4
20	8077635	8032480	NM_016199	LSM7	0.475116	3.035764e-7	5.260068e-3	2.630034e-4
21	8077635	7955777	NM_021640	C12orf10	0.473948	3.275392e-7	5.675272e-3	2.702510e-4
22	8077635	8178903	NM_021976	RXRB	0.473490	3.374298e-7	5.846646e-3	2.657566e-4
23	8077635	7998083	NR_003228	AFG3L1	0.471487	3.840517e-7	6.654464e-3	2.893245e-4
24	8077635	8030044	NM_170720	KCNJ14	0.470201	4.171389e-7	7.227765e-3	3.011569e-4
25	8077635	8002152	NM_005072	SLC12A4	0.468194	4.742417e-7	8.217186e-3	3.286874e-4
26	8077635	7918365	ENST00000384105		0.466518	5.275744e-7	9.141281e-3	3.515877e-4
27	8077635	7924868	NM_145214	TRIM11	0.466096	5.418539e-7	9.388703e-3	3.477297e-4
28	8077635	8137381	NM_031946	AGAP3	0.465569	5.602494e-7	9.707441e-3	3.466943e-4
29	8077635	8076937	NM_032019	HDAC10	0.463710	6.298880e-7	1.091407e-2	3.763472e-4
30	8077635	7907049	ENST00000363166		0.463681	6.310229e-7	1.093373e-2	3.644578e-4
31	8077635	8180111	NM_021976	RXRB	0.462754	6.687990e-7	1.158828e-2	3.738155e-4
32	8077635	8098942	NM_005663	WHSC2	0.462456	6.813986e-7	1.180659e-2	3.689561e-4
33	8077635	8045291	NM_080386	TUBA3D	0.462077	6.977691e-7	1.209025e-2	3.663711e-4
34	8077635	8125172	NM_006709	EHMT2	0.461004	7.460541e-7	1.292688e-2	3.802023e-4
35	8077635	8179884	NM_006709	EHMT2	0.461004	7.460541e-7	1.292688e-2	3.693394e-4
36	8077635	7920912	NM_020131	UBQLN4	0.460615	7.643625e-7	1.324411e-2	3.678919e-4
37	8077635	8001981	NM_013241	FHOD1	0.460537	7.680879e-7	1.330866e-2	3.596935e-4
38	8077635	8010848	NM_005993	TBCD	0.460169	7.858618e-7	1.361663e-2	3.583323e-4
39	8077635	7971915	AK127969	FLJ25694	0.459785	8.048079e-7	1.394491e-2	3.575617e-4
40	8077635	8155121	NM_003995	NPR2	0.459609	8.136696e-7	1.409845e-2	3.524613e-4
41	8077635	8125638	NM_021976	RXRB	0.459098	8.398357e-7	1.455183e-2	3.549227e-4
42	8077635	7898902	NM_007260	LYPLA2	0.458179	8.889648e-7	1.540309e-2	3.667403e-4
43	8077635	7896961	NM_031921	ATAD3B	0.457983	8.997438e-7	1.558986e-2	3.625549e-4
44	8077635	7941350	NM_032223	PCNXL3	0.457902	9.042860e-7	1.566856e-2	3.561037e-4
45	8077635	8159566	NM_016219	MAN1B1	0.457313	9.377185e-7	1.624785e-2	3.610633e-4
46	8077635	8026915	NM_015683	ARRDC2	0.456401	9.917758e-7	1.718450e-2	3.735761e-4
47	8077635	8018511	NM_032478	MRPL38	0.456154	1.006905e-6	1.744664e-2	3.712051e-4
48	8077635	8032076	NM_194460	RNF126	0.456073	1.011924e-6	1.753360e-2	3.652834e-4
49	8077635	8005978	NM_004295	TRAF4	0.455929	1.020952e-6	1.769003e-2	3.610211e-4
50	8077635	8158568	NM_006676	USP20	0.454819	1.092710e-6	1.893339e-2	3.786679e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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